Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

• Diamantis Sellis ,

  Contributed equally to this work with: Diamantis Sellis, Frédéric Guérin

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft

  Current address: CosmoTech, 5 Passage du Vercors, Lyon, France

  Affiliation Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, Villeurbanne, France

  https://orcid.org/0000-0003-4059-5507

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• Frédéric Guérin ,

  Contributed equally to this work with: Diamantis Sellis, Frédéric Guérin

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Resources, Validation, Visualization, Writing – original draft

  Current address: Scipio bioscience, Montrouge, France

  Affiliation Université de Paris, CNRS, Institut Jacques Monod, Paris, France

  https://orcid.org/0000-0001-5723-4439

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• Olivier Arnaiz,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – review & editing

  Affiliation Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France

  https://orcid.org/0000-0002-9626-1015

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• Walker Pett,

  Roles Methodology

  Affiliation Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, Villeurbanne, France

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• Emmanuelle Lerat,

  Roles Formal analysis, Investigation, Visualization

  Affiliation Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, Villeurbanne, France

  https://orcid.org/0000-0001-6757-8796

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• Nicole Boggetto,

  Roles Investigation, Methodology, Resources

  Affiliation Université de Paris, CNRS, Institut Jacques Monod, Paris, France

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• Sascha Krenek,

  Roles Investigation, Resources, Validation, Visualization, Writing – review & editing

  Affiliation TU Dresden, Institute of Hydrobiology, Dresden, Germany

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• Thomas Berendonk,

  Roles Resources

  Affiliation TU Dresden, Institute of Hydrobiology, Dresden, Germany

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• Arnaud Couloux,

  Roles Investigation, Methodology, Resources, Software

  Affiliation Génomique Métabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Université d’Évry, Université Paris-Saclay, Evry, France

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• Jean-Marc Aury,

  Roles Investigation, Methodology, Resources, Software

  Affiliation Génomique Métabolique, Genoscope, Institut de biologie François Jacob, CEA, CNRS, Université d’Évry, Université Paris-Saclay, Evry, France

  https://orcid.org/0000-0003-1718-3010

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• Karine Labadie,

  Roles Conceptualization, Investigation, Methodology, Project administration, Resources, Supervision

  Affiliation Genoscope, Institut de biologie François-Jacob, Commissariat à l’Energie Atomique (CEA), Université Paris-Saclay, Evry, France

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• Sophie Malinsky,

  Roles Investigation, Resources, Writing – review & editing

  Affiliations Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France, Université de Paris, Paris, France

  https://orcid.org/0000-0002-8268-0067

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• Simran Bhullar,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France

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• Eric Meyer,

  Roles Conceptualization, Funding acquisition, Investigation, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, Université PSL, Paris, France

  https://orcid.org/0000-0002-3161-8597

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• Linda Sperling,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), Gif-sur-Yvette, France

  https://orcid.org/0000-0002-7772-4774

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• Laurent Duret ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: Laurent.Duret@univ-lyon1.fr (LD); sandra.duharcourt@ijm.fr (SD)

  ¶‡ LD and SD also contributed equally to this work.

  Affiliation Université de Lyon, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR 5558, Villeurbanne, France

  https://orcid.org/0000-0003-2836-3463

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•  [ ... ],
• Sandra Duharcourt

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: Laurent.Duret@univ-lyon1.fr (LD); sandra.duharcourt@ijm.fr (SD)

  ¶‡ LD and SD also contributed equally to this work.

  Affiliation Université de Paris, CNRS, Institut Jacques Monod, Paris, France

  https://orcid.org/0000-0002-8913-8799

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