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Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes
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Neal G. Ravindra ,
Contributed equally to this work with: Neal G. Ravindra, Mia Madel Alfajaro, Victor Gasque
Roles Conceptualization, Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing
Affiliations Cardiovascular Research Center, Section of Cardiovascular Medicine, Department of Internal Medicine, Yale School Medicine, New Haven, Connecticut, United States of America, Department of Computer Science, Yale University, New Haven, Connecticut, United States of America
⨯ - Mia Madel Alfajaro ,
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Victor Gasque ,
Contributed equally to this work with: Neal G. Ravindra, Mia Madel Alfajaro, Victor Gasque
Roles Formal analysis, Methodology, Writing – review & editing
Affiliations Cardiovascular Research Center, Section of Cardiovascular Medicine, Department of Internal Medicine, Yale School Medicine, New Haven, Connecticut, United States of America, Department of Computer Science, Yale University, New Haven, Connecticut, United States of America, Universite Claude Bernard Lyon 1, Faculte de Medecine Lyon Est, Lyon, France, Department de Bioinformatique, Univ Evry, Universite Paris-Saclay, Paris, France
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Nicholas C. Huston,
Roles Formal analysis, Investigation, Writing – review & editing
Affiliation Department of Molecular Biophysics & Biochemistry, Yale School of Medicine, New Haven, Connecticut, United States of America
⨯ - Han Wan,
- Klara Szigeti-Buck,
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Yuki Yasumoto,
Roles Investigation
Affiliations Department of Comparative Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America, Department of Neuroscience, Yale School of Medicine, New Haven, Connecticut, United States of America, Department of Obstetrics, Gynecology, and Reproductive Sciences, Yale School of Medicine, New Haven, Connecticut, United of States of America
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Allison M. Greaney,
Roles Investigation
Affiliation Department of Biomedical Engineering, Yale University, New Haven, Connecticut, United States of America
⨯ - Victoria Habet,
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Ryan D. Chow,
Roles Investigation
Affiliation Department of Genetics, Yale School of Medicine, New Haven, Connecticut, United States of America
⨯ -
Jennifer S. Chen,
Roles Investigation, Resources
Affiliations Department of Laboratory Medicine, Yale University, New Haven, Connecticut, United States of America, Department of Immunobiology, Yale University, New Haven, Connecticut, United States of America
⨯ -
Jin Wei,
Roles Formal analysis, Investigation, Writing – review & editing
Affiliations Department of Laboratory Medicine, Yale University, New Haven, Connecticut, United States of America, Department of Immunobiology, Yale University, New Haven, Connecticut, United States of America
⨯ - Renata B. Filler,
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Bao Wang,
Roles Investigation
Affiliations Department of Laboratory Medicine, Yale University, New Haven, Connecticut, United States of America, Department of Immunobiology, Yale University, New Haven, Connecticut, United States of America
⨯ - Guilin Wang,
- Laura E. Niklason,
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Ruth R. Montgomery,
Roles Resources
Affiliation Department of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, United States of America
⨯ - Stephanie C. Eisenbarth,
- Sidi Chen,
- Adam Williams,
- Akiko Iwasaki,
- Tamas L. Horvath,
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Ellen F. Foxman,
Roles Resources
Affiliations Department of Laboratory Medicine, Yale University, New Haven, Connecticut, United States of America, Department of Immunobiology, Yale University, New Haven, Connecticut, United States of America
⨯ - Richard W. Pierce,
- Anna Marie Pyle,
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David van Dijk ,
Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing
* E-mail: david.vandijk@yale.edu (DvD); craig.wilen@yale.edu (CBW)
Affiliations Cardiovascular Research Center, Section of Cardiovascular Medicine, Department of Internal Medicine, Yale School Medicine, New Haven, Connecticut, United States of America, Department of Computer Science, Yale University, New Haven, Connecticut, United States of America
⨯ - [ ... ],
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Craig B. Wilen
Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing
* E-mail: david.vandijk@yale.edu (DvD); craig.wilen@yale.edu (CBW)
Affiliations Department of Laboratory Medicine, Yale University, New Haven, Connecticut, United States of America, Department of Immunobiology, Yale University, New Haven, Connecticut, United States of America
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https://orcid.org/0000-0001-5558-3758
Single-cell longitudinal analysis of SARS-CoV-2 infection in human airway epithelium identifies target cells, alterations in gene expression, and cell state changes
- Neal G. Ravindra,
- Mia Madel Alfajaro,
- Victor Gasque,
- Nicholas C. Huston,
- Han Wan,
- Klara Szigeti-Buck,
- Yuki Yasumoto,
- Allison M. Greaney,
- Victoria Habet,
- Ryan D. Chow
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- Published: March 17, 2021
- https://doi.org/10.1371/journal.pbio.3001143