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Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae
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Taj Azarian ,
Roles Conceptualization, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: taj.azarian@ucf.edu
¶‡ TA and PPM are joint first authors on this work. ML and WPH are joint senior authors on this work.
Affiliations Burnett School of Biomedical Sciences, University of Central Florida, Orlando, Florida, United States of America, Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America
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Pamela P. Martinez ,
Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
Current address: Department of Microbiology, University of Illinois at Urbana Champaign, Illinois, United States of America.
¶‡ TA and PPM are joint first authors on this work. ML and WPH are joint senior authors on this work.
Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America
⨯ - Brian J. Arnold,
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Xueting Qiu,
Roles Data curation, Investigation, Validation, Writing – review & editing
Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America
⨯ - Lindsay R. Grant,
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Jukka Corander,
Roles Formal analysis, Investigation, Methodology, Supervision, Writing – review & editing
Affiliations Helsinki Institute for Information Technology, Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland, Department of Biostatistics, University of Oslo, Oslo, Norway, Infection Genomics, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom
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Christophe Fraser,
Roles Investigation, Methodology, Validation, Writing – review & editing
Affiliation Big Data Institute, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom
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Nicholas J. Croucher,
Roles Formal analysis, Investigation, Methodology, Writing – review & editing
Affiliation MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom
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Laura L. Hammitt,
Roles Conceptualization, Investigation, Methodology, Resources, Supervision, Writing – review & editing
Affiliation Center for American Indian Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America
⨯ - Raymond Reid,
- Mathuram Santosham,
- Robert C. Weatherholtz,
- Stephen D. Bentley,
- Katherine L. O’Brien,
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Marc Lipsitch ,
Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing
¶‡ TA and PPM are joint first authors on this work. ML and WPH are joint senior authors on this work.
Affiliations Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America, Department of Immunology and Infectious Diseases, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America
⨯ - [ ... ],
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William P. Hanage
Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing
¶‡ TA and PPM are joint first authors on this work. ML and WPH are joint senior authors on this work.
Affiliation Center for Communicable Disease Dynamics, Department of Epidemiology, T.H. Chan School of Public Health, Harvard University, Boston, Massachusetts, United States of America
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https://orcid.org/0000-0002-8611-5241
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae
- Taj Azarian,
- Pamela P. Martinez,
- Brian J. Arnold,
- Xueting Qiu,
- Lindsay R. Grant,
- Jukka Corander,
- Christophe Fraser,
- Nicholas J. Croucher,
- Laura L. Hammitt,
- Raymond Reid
- Published: October 22, 2020
- https://doi.org/10.1371/journal.pbio.3000878