About the Authors

Vlastimil Novak

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Peter F. Andeer

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Eoghan King

Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

Affiliations The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)–Instituto Nacional de Investigación y Tecnología Agraria y Alimentación (INIA/CSIC), Campus de Montegancedo, Madrid, Spain

Jacob Calabria

Roles Data curation, Investigation, Writing – review & editing

Affiliation Faculty of Science, School of BioSciences, The University of Melbourne, Parkville, Australia

Connor Fitzpatrick

Roles Data curation, Investigation, Writing – review & editing

Affiliation Department of Biology and Howard Hughes Medical Institute, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America

Jana M. Kelm

Roles Data curation, Investigation, Writing – review & editing

Affiliation Institute for Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany

Kathrin Wippel

Roles Data curation, Investigation, Writing – review & editing

Affiliations Max Planck Institute for Plant Breeding Research, Cologne, Germany, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park Amsterdam, Amsterdam, The Netherlands

Suzanne M. Kosina

Roles Formal analysis, Validation, Writing – review & editing

Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Benjamin P. Bowen

Roles Formal analysis, Writing – review & editing

Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Chris Daum

Roles Investigation, Resources, Writing – review & editing

Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Matthew Zane

Roles Investigation, Resources, Writing – review & editing

Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Archana Yadav

Roles Formal analysis, Visualization, Writing – review & editing

Affiliation Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Mingfei Chen

Roles Investigation, Writing – review & editing

Affiliation Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Dor Russ

Roles Investigation, Writing – review & editing

Affiliation Department of Biology and Howard Hughes Medical Institute, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America

Catharine A. Adams

Roles Resources, Writing – review & editing

Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, United States of America

Trenton K. Owens

Roles Investigation, Writing – review & editing

Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Bradie Lee

Roles Methodology, Writing – review & editing

Affiliations The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, United States of America

Yezhang Ding

Roles Investigation, Writing – review & editing

Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Zineb Sordo

Roles Data curation, Formal analysis, Writing – review & editing

Affiliation Computing Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Romy Chakraborty

Roles Funding acquisition, Resources, Supervision, Writing – review & editing

Affiliation Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Simon Roux

Roles Data curation, Formal analysis, Supervision, Writing – review & editing

Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Adam M. Deutschbauer

Roles Formal analysis, Funding acquisition, Supervision, Writing – review & editing

Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, United States of America

Daniela Ushizima

Roles Data curation, Formal analysis, Supervision, Writing – review & editing

Affiliation Computing Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Karsten Zengler

Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

Affiliations Department of Pediatrics, University of California, San Diego, La Jolla, California, United States of America, Department of Bioengineering, University of California, San Diego, La Jolla, California, United States of America, Center for Microbiome Innovation, University of California, San Diego, La Jolla, California, United States of America, Program in Materials Science and Engineering, University of California, San Diego, La Jolla, California, United States of America

Borjana Arsova

Roles Data curation, Supervision, Writing – review & editing

Affiliation Institute for Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany

Jeffery L. Dangl

Roles Data curation, Supervision, Writing – review & editing

Affiliation Department of Biology and Howard Hughes Medical Institute, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America

Paul Schulze-Lefert

Roles Data curation, Supervision, Writing – review & editing

Affiliation Max Planck Institute for Plant Breeding Research, Cologne, Germany

Michelle Watt

Roles Data curation, Resources, Supervision, Writing – review & editing

Affiliation Faculty of Science, School of BioSciences, The University of Melbourne, Parkville, Australia

John P. Vogel

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

jpvogel@lbl.gov (JPV); trnorthen@lbl.gov (TRN)

Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Trent R. Northen

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

jpvogel@lbl.gov (JPV); trnorthen@lbl.gov (TRN)

Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

Competing Interests

I have read the journal’s policy and the authors of this manuscript have the following competing interests: P.F.A. and T.R.N. are inventors of patent US11510376B2, held by the University of California, covering an Ecosystem device for determining plant-microbe interactions. All other authors have declared that no competing interests exist.