About the Authors

Cecilia Noecker

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

Juan Sanchez

Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

Affiliation Chan Zuckerberg Biohub–San Francisco, San Francisco, California, United States of America

Jordan E. Bisanz

Roles Investigation, Methodology, Writing – review & editing

Current address: Department of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America

Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

Veronica Escalante

Roles Investigation, Writing – review & editing

Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

Margaret Alexander

Roles Investigation, Writing – review & editing

Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

Kai Trepka

Roles Formal analysis, Writing – review & editing

Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

Almut Heinken

Roles Formal analysis, Software, Writing – review & editing

Current address: INSERM UMRS 1256, Nutrition, Genetics, and Environmental Risk Exposure (NGERE), University of Lorraine, Nancy, France

Affiliation School of Medicine, National University of Ireland, Galway, Ireland

Yuanyuan Liu

Roles Data curation, Formal analysis, Investigation, Writing – review & editing

Affiliation Department of Pathology, Stanford University, Stanford, California, United States of America

Dylan Dodd

Roles Data curation, Supervision, Writing – review & editing

Affiliations Department of Pathology, Stanford University, Stanford, California, United States of America, Department of Microbiology & Immunology, Stanford University, Stanford, California, United States of America

Ines Thiele

Roles Software, Supervision, Writing – review & editing

Affiliations School of Medicine, National University of Ireland, Galway, Ireland, Ryan Institute, University of Galway, Galway, Ireland, APC Microbiome Ireland, Cork, Ireland

Brian C. DeFelice

Roles Formal analysis, Methodology, Supervision, Writing – review & editing

Affiliation Chan Zuckerberg Biohub–San Francisco, San Francisco, California, United States of America

Peter J. Turnbaugh

Roles Conceptualization, Funding acquisition, Methodology, Supervision, Writing – review & editing

peter.turnbaugh@ucsf.edu

Affiliations Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America, Chan Zuckerberg Biohub–San Francisco, San Francisco, California, United States of America

Competing Interests

I have read the journal’s policy and the authors of this manuscript have the following competing interests: P.J.T. is on the scientific advisory boards for Pendulum, Seed, and SNIPRbiome; there is no direct overlap between the current study and these consulting duties. D.D. is a co-founder of Federation Bio, a company developing microbiome-based therapeutics. All other authors have no relevant declarations.