May 2015

Human malaria parasite species were originally acquired from other primate hosts and subsequently became endemic, then spread throughout large parts of the world. A major zoonosis is now occurring with Plasmodium knowlesi from macaques in Southeast Asia, with a recent acceleration in numbers of reported cases particularly in Malaysia. Divis et al.

Image Credit: Balbir Singh

Opinion

How Does the Dinoflagellate Parasite Hematodinium Outsmart the Immune System of Its Crustacean Hosts?

Andrew F. Rowley, Amanda L. Smith, Charlotte E. Davies

PLOS Pathogens: published May 7, 2015 | https://doi.org/10.1371/journal.ppat.1004724

Pearls

The Role of Horizontal Gene Transfer in the Evolution of the Oomycetes

Fiona Savory, Guy Leonard, Thomas A. Richards

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004805

Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi

Jana Sperschneider, Peter N. Dodds, Donald M. Gardiner, John M. Manners, Karam B. Singh, Jennifer M. Taylor

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004806

Parasites and Their Heterophagic Appetite for Disease

Vern B. Carruthers

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004803

Investigating Fungal Outbreaks in the 21st Century

Anastasia P. Litvintseva, Mary E. Brandt, Rajal K. Mody, Shawn R. Lockhart

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004804

Dust Devil: The Life and Times of the Fungus That Causes Valley Fever

Eric R. G. Lewis, Jolene R. Bowers, Bridget M. Barker

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004762

Systems Biology for Biologists

Rachel A. Hillmer

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004786

The Elusive Role of the Prion Protein and the Mechanism of Toxicity in Prion Disease

Roberto Chiesa

PLOS Pathogens: published May 7, 2015 | https://doi.org/10.1371/journal.ppat.1004745

Remembering Mumps

Donald R. Latner, Carole J. Hickman

PLOS Pathogens: published May 7, 2015 | https://doi.org/10.1371/journal.ppat.1004791

Review

Intestinal Colonization Dynamics of Vibrio cholerae

Salvador Almagro-Moreno, Kali Pruss, Ronald K. Taylor

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004787

Research Articles

The EBNA-2 N-Terminal Transactivation Domain Folds into a Dimeric Structure Required for Target Gene Activation

Anders Friberg, Sybille Thumann, Janosch Hennig, Peijian Zou, Elfriede Nössner, Paul D. Ling, Michael Sattler, Bettina Kempkes

PLOS Pathogens: published May 29, 2015 | https://doi.org/10.1371/journal.ppat.1004910

Evidence for a Novel Mechanism of Influenza Virus-Induced Type I Interferon Expression by a Defective RNA-Encoded Protein

Yvonne Boergeling, Timofey S. Rozhdestvensky, Mirco Schmolke, Patricia Resa-Infante, Thomas Robeck, Gerrit Randau, Thorsten Wolff, Gülsah Gabriel, Jürgen Brosius, Stephan Ludwig

PLOS Pathogens: published May 29, 2015 | https://doi.org/10.1371/journal.ppat.1004924

Vaccine-Elicited Tier 2 HIV-1 Neutralizing Antibodies Bind to Quaternary Epitopes Involving Glycan-Deficient Patches Proximal to the CD4 Binding Site

Ema T. Crooks, Tommy Tong, Bimal Chakrabarti, Kristin Narayan, Ivelin S. Georgiev, Sergey Menis, Xiaoxing Huang, Daniel Kulp, Keiko Osawa, Janelle Muranaka, Guillaume Stewart-Jones, Joanne Destefano, Sijy O’Dell, Celia LaBranche, James E. Robinson, David C. Montefiori, Krisha McKee, Sean X. Du, Nicole Doria-Rose, Peter D. Kwong, John R. Mascola, Ping Zhu, William R. Schief, Richard T. Wyatt, Robert G. Whalen, James M. Binley

PLOS Pathogens: published May 29, 2015 | https://doi.org/10.1371/journal.ppat.1004932

TNF-α Induced by Hepatitis C Virus via TLR7 and TLR8 in Hepatocytes Supports Interferon Signaling via an Autocrine Mechanism

Jiyoung Lee, Yongjun Tian, Stephanie Tze Chan, Ja Yeon Kim, Cecilia Cho, Jing-hsiung James Ou

PLOS Pathogens: published May 29, 2015 | https://doi.org/10.1371/journal.ppat.1004937

Phospholipase D1 Couples CD4⁺ T Cell Activation to c-Myc-Dependent Deoxyribonucleotide Pool Expansion and HIV-1 Replication

Harry E. Taylor, Glenn E. Simmons Jr, Thomas P. Mathews, Atanu K. Khatua, Waldemar Popik, Craig W. Lindsley, Richard T. D’Aquila, H. Alex Brown

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004864

Ly6C^- Monocytes Regulate Parasite-Induced Liver Inflammation by Inducing the Differentiation of Pathogenic Ly6C⁺ Monocytes into Macrophages

Yannick Morias, Chloé Abels, Damya Laoui, Eva Van Overmeire, Martin Guilliams, Elio Schouppe, Frank Tacke, Carlie J. deVries, Patrick De Baetselier, Alain Beschin

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004873

Paradoxical Immune Responses in Non-HIV Cryptococcal Meningitis

Anil A. Panackal, Simone C. Wuest, Yen-Chih Lin, Tianxia Wu, Nannan Zhang, Peter Kosa, Mika Komori, Andrew Blake, Sarah K. Browne, Lindsey B. Rosen, Ferry Hagen, Jacques Meis, Stuart M. Levitz, Martha Quezado, Dima Hammoud, John E. Bennett, Bibi Bielekova, Peter R. Williamson

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004884

Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species

Paul C. S. Divis, Balbir Singh, Fread Anderios, Shamilah Hisam, Asmad Matusop, Clemens H. Kocken, Samuel A. Assefa, Craig W. Duffy, David J. Conway

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004888

Phosphatidic Acid Produced by Phospholipase D Promotes RNA Replication of a Plant RNA Virus

Kiwamu Hyodo, Takako Taniguchi, Yuki Manabe, Masanori Kaido, Kazuyuki Mise, Tatsuya Sugawara, Hisaaki Taniguchi, Tetsuro Okuno

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004909

Rapid Sequestration of Leishmania mexicana by Neutrophils Contributes to the Development of Chronic Lesion

Benjamin P. Hurrell, Steffen Schuster, Eva Grün, Manuel Coutaz, Roderick A. Williams, Werner Held, Bernard Malissen, Marie Malissen, Shida Yousefi, Hans-Uwe Simon, Andreas J. Müller, Fabienne Tacchini-Cottier

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004929

Pseudomonas aeruginosa ExoT Induces Atypical Anoikis Apoptosis in Target Host Cells by Transforming Crk Adaptor Protein into a Cytotoxin

Stephen Wood, Josef Goldufsky, Sasha H. Shafikhani

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004934

Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin

Austin G. Meyer, Claus O. Wilke

PLOS Pathogens: published May 28, 2015 | https://doi.org/10.1371/journal.ppat.1004940

Genome-Wide Identification of the Target Genes of AP2-O, a Plasmodium AP2-Family Transcription Factor

Izumi Kaneko, Shiroh Iwanaga, Tomomi Kato, Issei Kobayashi, Masao Yuda

PLOS Pathogens: published May 27, 2015 | https://doi.org/10.1371/journal.ppat.1004905

Selective Recruitment of Nuclear Factors to Productively Replicating Herpes Simplex Virus Genomes

Jill A. Dembowski, Neal A. DeLuca

PLOS Pathogens: published May 27, 2015 | https://doi.org/10.1371/journal.ppat.1004939

Activation of Salmonella Typhi-Specific Regulatory T Cells in Typhoid Disease in a Wild-Type S. Typhi Challenge Model

Monica A. McArthur, Stephanie Fresnay, Laurence S. Magder, Thomas C. Darton, Claire Jones, Claire S. Waddington, Christoph J. Blohmke, Gordon Dougan, Brian Angus, Myron M. Levine, Andrew J. Pollard, Marcelo B. Sztein

PLOS Pathogens: published May 22, 2015 | https://doi.org/10.1371/journal.ppat.1004914

L-Rhamnosylation of Listeria monocytogenes Wall Teichoic Acids Promotes Resistance to Antimicrobial Peptides by Delaying Interaction with the Membrane

Filipe Carvalho, Magda L. Atilano, Rita Pombinho, Gonçalo Covas, Richard L. Gallo, Sérgio R. Filipe, Sandra Sousa, Didier Cabanes

PLOS Pathogens: published May 22, 2015 | https://doi.org/10.1371/journal.ppat.1004919

Vibrio cholerae Response Regulator VxrB Controls Colonization and Regulates the Type VI Secretion System

Andrew T. Cheng, Karen M. Ottemann, Fitnat H. Yildiz

PLOS Pathogens: published May 22, 2015 | https://doi.org/10.1371/journal.ppat.1004933

Gammaherpesvirus Co-infection with Malaria Suppresses Anti-parasitic Humoral Immunity

Caline G. Matar, Neil R. Anthony, Brigid M. O’Flaherty, Nathan T. Jacobs, Lalita Priyamvada, Christian R. Engwerda, Samuel H. Speck, Tracey J. Lamb

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004858

TRAF1 Coordinates Polyubiquitin Signaling to Enhance Epstein-Barr Virus LMP1-Mediated Growth and Survival Pathway Activation

Hannah Greenfeld, Kaoru Takasaki, Michael J. Walsh, Ina Ersing, Katharina Bernhardt, Yijie Ma, Bishi Fu, Camille W. Ashbaugh, Jackson Cabo, Sarah B. Mollo, Hufeng Zhou, Shitao Li, Benjamin E. Gewurz

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004890

The Engineering of a Novel Ligand in gH Confers to HSV an Expanded Tropism Independent of gD Activation by Its Receptors

Valentina Gatta, Biljana Petrovic, Gabriella Campadelli-Fiume

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004907

Neutrophil-Derived MMP-8 Drives AMPK-Dependent Matrix Destruction in Human Pulmonary Tuberculosis

Catherine W. M. Ong, Paul T. Elkington, Sara Brilha, Cesar Ugarte-Gil, Maite T. Tome-Esteban, Liku B. Tezera, Przemyslaw J. Pabisiak, Rachel C. Moores, Tarangini Sathyamoorthy, Vimal Patel, Robert H. Gilman, Joanna C. Porter, Jon S. Friedland

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004917

Influenza A Virus on Oceanic Islands: Host and Viral Diversity in Seabirds in the Western Indian Ocean

Camille Lebarbenchon, Audrey Jaeger, Chris Feare, Matthieu Bastien, Muriel Dietrich, Christine Larose, Erwan Lagadec, Gérard Rocamora, Nirmal Shah, Hervé Pascalis, Thierry Boulinier, Matthieu Le Corre, David E. Stallknecht, Koussay Dellagi

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004925

The Expression of Functional Vpx during Pathogenic SIVmac Infections of Rhesus Macaques Suppresses SAMHD1 in CD4⁺ Memory T Cells

Masashi Shingai, Sarah Welbourn, Jason M. Brenchley, Priyamvada Acharya, Eri Miyagi, Ronald J. Plishka, Alicia Buckler-White, Peter D. Kwong, Yoshiaki Nishimura, Klaus Strebel, Malcolm A. Martin

PLOS Pathogens: published May 21, 2015 | https://doi.org/10.1371/journal.ppat.1004928

Experimental Evolution of an RNA Virus in Wild Birds: Evidence for Host-Dependent Impacts on Population Structure and Competitive Fitness

Nathan D. Grubaugh, Darci R. Smith, Doug E. Brackney, Angela M. Bosco-Lauth, Joseph R. Fauver, Corey L. Campbell, Todd A. Felix, Hannah Romo, Nisha K. Duggal, Elizabeth A. Dietrich, Tyler Eike, Jennifer E. Beane, Richard A. Bowen, William C. Black, Aaron C. Brault, Gregory D. Ebel

PLOS Pathogens: published May 20, 2015 | https://doi.org/10.1371/journal.ppat.1004874

Manipulation of the Xanthophyll Cycle Increases Plant Susceptibility to Sclerotinia sclerotiorum

Jun Zhou, Lizhang Zeng, Jian Liu, Da Xing

PLOS Pathogens: published May 20, 2015 | https://doi.org/10.1371/journal.ppat.1004878

The Myelin and Lymphocyte Protein MAL Is Required for Binding and Activity of Clostridium perfringens ε-Toxin

Kareem Rashid Rumah, Yinghua Ma, Jennifer R. Linden, Myat Lin Oo, Josef Anrather, Nicole Schaeren-Wiemers, Miguel A. Alonso, Vincent A. Fischetti, Mark S. McClain, Timothy Vartanian

PLOS Pathogens: published May 20, 2015 | https://doi.org/10.1371/journal.ppat.1004896

Widespread Recombination, Reassortment, and Transmission of Unbalanced Compound Viral Genotypes in Natural Arenavirus Infections

Mark D. Stenglein, Elliott R. Jacobson, Li-Wen Chang, Chris Sanders, Michelle G. Hawkins, David S-M. Guzman, Tracy Drazenovich, Freeland Dunker, Elizabeth K. Kamaka, Debbie Fisher, Drury R. Reavill, Linda F. Meola, Gregory Levens, Joseph L. DeRisi

PLOS Pathogens: published May 20, 2015 | https://doi.org/10.1371/journal.ppat.1004900

Characterization of Arabidopsis Transcriptional Responses to Different Aphid Species Reveals Genes that Contribute to Host Susceptibility and Non-host Resistance

Maëlle Jaouannet, Jenny A. Morris, Peter E. Hedley, Jorunn I. B. Bos

PLOS Pathogens: published May 20, 2015 | https://doi.org/10.1371/journal.ppat.1004918

FCRL5 Delineates Functionally Impaired Memory B Cells Associated with Plasmodium falciparum Exposure

Richard T. Sullivan, Charles C. Kim, Mary F. Fontana, Margaret E. Feeney, Prasanna Jagannathan, Michelle J. Boyle, Chris J. Drakeley, Isaac Ssewanyana, Felistas Nankya, Harriet Mayanja-Kizza, Grant Dorsey, Bryan Greenhouse

PLOS Pathogens: published May 19, 2015 | https://doi.org/10.1371/journal.ppat.1004894

The Recent Evolution of a Maternally-Inherited Endosymbiont of Ticks Led to the Emergence of the Q Fever Pathogen, Coxiella burnetii

Olivier Duron, Valérie Noël, Karen D. McCoy, Matteo Bonazzi, Karim Sidi-Boumedine, Olivier Morel, Fabrice Vavre, Lionel Zenner, Elsa Jourdain, Patrick Durand, Céline Arnathau, François Renaud, Jean-François Trape, Abel S. Biguezoton, Julie Cremaschi, Muriel Dietrich, Elsa Léger, Anaïs Appelgren, Marlène Dupraz, Elena Gómez-Díaz, Georges Diatta, Guiguigbaza-Kossigan Dayo, Hassane Adakal, Sébastien Zoungrana, Laurence Vial, Christine Chevillon

PLOS Pathogens: published May 15, 2015 | https://doi.org/10.1371/journal.ppat.1004892

Circulating Pneumolysin Is a Potent Inducer of Cardiac Injury during Pneumococcal Infection

Yasir Alhamdi, Daniel R. Neill, Simon T. Abrams, Hesham A. Malak, Reham Yahya, Richard Barrett-Jolley, Guozheng Wang, Aras Kadioglu, Cheng-Hock Toh

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004836

Helminth Infection and Commensal Microbiota Drive Early IL-10 Production in the Skin by CD4⁺ T Cells That Are Functionally Suppressive

David E. Sanin, Catriona T. Prendergast, Claire D. Bourke, Adrian P. Mountford

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004841

Fob1 and Fob2 Proteins Are Virulence Determinants of Rhizopus oryzae via Facilitating Iron Uptake from Ferrioxamine

Mingfu Liu, Lin Lin, Teclegiorgis Gebremariam, Guanpingsheng Luo, Christopher D. Skory, Samuel W. French, Tsui-Fen Chou, John E. Edwards Jr., Ashraf S. Ibrahim

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004842

Mechanisms of Stage-Transcending Protection Following Immunization of Mice with Late Liver Stage-Arresting Genetically Attenuated Malaria Parasites

Brandon K. Sack, Gladys J. Keitany, Ashley M. Vaughan, Jessica L. Miller, Ruobing Wang, Stefan H. I. Kappe

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004855

Inhibition and Reversal of Microbial Attachment by an Antibody with Parasteric Activity against the FimH Adhesin of Uropathogenic E. coli

Dagmara I. Kisiela, Hovhannes Avagyan, Della Friend, Aachal Jalan, Shivani Gupta, Gianluca Interlandi, Yan Liu, Veronika Tchesnokova, Victoria B. Rodriguez, John P. Sumida, Roland K. Strong, Xue-Ru Wu, Wendy E. Thomas, Evgeni V. Sokurenko

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004857

Circumventing Y. pestis Virulence by Early Recruitment of Neutrophils to the Lungs during Pneumonic Plague

Yaron Vagima, Ayelet Zauberman, Yinon Levy, David Gur, Avital Tidhar, Moshe Aftalion, Avigdor Shafferman, Emanuelle Mamroud

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004893

Varicella Viruses Inhibit Interferon-Stimulated JAK-STAT Signaling through Multiple Mechanisms

Marieke C. Verweij, Mary Wellish, Travis Whitmer, Daniel Malouli, Martin Lapel, Stipan Jonjić, Juergen G. Haas, Victor R. DeFilippis, Ravi Mahalingam, Klaus Früh

PLOS Pathogens: published May 14, 2015 | https://doi.org/10.1371/journal.ppat.1004901

A Single Protein S-acyl Transferase Acts through Diverse Substrates to Determine Cryptococcal Morphology, Stress Tolerance, and Pathogenic Outcome

Felipe H. Santiago-Tirado, Tao Peng, Meng Yang, Howard C. Hang, Tamara L. Doering

PLOS Pathogens: published May 13, 2015 | https://doi.org/10.1371/journal.ppat.1004908

Edin Expression in the Fat Body Is Required in the Defense Against Parasitic Wasps in Drosophila melanogaster

Leena-Maija Vanha-aho, Ines Anderl, Laura Vesala, Dan Hultmark, Susanna Valanne, Mika Rämet

PLOS Pathogens: published May 12, 2015 | https://doi.org/10.1371/journal.ppat.1004895

A Ribonucleoprotein Complex Protects the Interleukin-6 mRNA from Degradation by Distinct Herpesviral Endonucleases

Mandy Muller, Stephanie Hutin, Oliver Marigold, Kathy H. Li, Al Burlingame, Britt A. Glaunsinger

PLOS Pathogens: published May 12, 2015 | https://doi.org/10.1371/journal.ppat.1004899

Human Cytomegalovirus miR-UL112-3p Targets TLR2 and Modulates the TLR2/IRAK1/NFκB Signaling Pathway

Igor Landais, Chantel Pelton, Daniel Streblow, Victor DeFilippis, Shannon McWeeney, Jay A. Nelson

PLOS Pathogens: published May 8, 2015 | https://doi.org/10.1371/journal.ppat.1004881

The NLRP3 Inflammasome Is a Pathogen Sensor for Invasive Entamoeba histolytica via Activation of α5β1 Integrin at the Macrophage-Amebae Intercellular Junction

Leanne Mortimer, France Moreau, Steve Cornick, Kris Chadee

PLOS Pathogens: published May 8, 2015 | https://doi.org/10.1371/journal.ppat.1004887

Natural Killer Cell Sensing of Infected Cells Compensates for MyD88 Deficiency but Not IFN-I Activity in Resistance to Mouse Cytomegalovirus

Clément Cocita, Rachel Guiton, Gilles Bessou, Lionel Chasson, Marilyn Boyron, Karine Crozat, Marc Dalod

PLOS Pathogens: published May 8, 2015 | https://doi.org/10.1371/journal.ppat.1004897

cAMP-Signalling Regulates Gametocyte-Infected Erythrocyte Deformability Required for Malaria Parasite Transmission

Ghania Ramdani, Bernina Naissant, Eloise Thompson, Florence Breil, Audrey Lorthiois, Florian Dupuy, Ross Cummings, Yoann Duffier, Yolanda Corbett, Odile Mercereau-Puijalon, Kenneth Vernick, Donatella Taramelli, David A. Baker, Gordon Langsley, Catherine Lavazec

PLOS Pathogens: published May 7, 2015 | https://doi.org/10.1371/journal.ppat.1004815

A Two-Component DNA-Prime/Protein-Boost Vaccination Strategy for Eliciting Long-Term, Protective T Cell Immunity against Trypanosoma cruzi

Shivali Gupta, Nisha J. Garg

PLOS Pathogens: published May 7, 2015 | https://doi.org/10.1371/journal.ppat.1004828

Staphylococcus aureus Survives with a Minimal Peptidoglycan Synthesis Machine but Sacrifices Virulence and Antibiotic Resistance

Patricia Reed, Magda L. Atilano, Renato Alves, Egbert Hoiczyk, Xinwei Sher, Nathalie T. Reichmann, Pedro M. Pereira, Terry Roemer, Sérgio R. Filipe, José B. Pereira-Leal, Petros Ligoxygakis, Mariana G. Pinho

PLOS Pathogens: published May 7, 2015 | https://doi.org/10.1371/journal.ppat.1004891

Human and Murine Clonal CD8+ T Cell Expansions Arise during Tuberculosis Because of TCR Selection

Cláudio Nunes-Alves, Matthew G. Booty, Stephen M. Carpenter, Alissa C. Rothchild, Constance J. Martin, Danielle Desjardins, Katherine Steblenko, Henrik N. Kløverpris, Rajhmun Madansein, Duran Ramsuran, Alasdair Leslie, Margarida Correia-Neves, Samuel M. Behar

PLOS Pathogens: published May 6, 2015 | https://doi.org/10.1371/journal.ppat.1004849

Recovery of Recombinant Crimean Congo Hemorrhagic Fever Virus Reveals a Function for Non-structural Glycoproteins Cleavage by Furin

Éric Bergeron, Marko Zivcec, Ayan K. Chakrabarti, Stuart T. Nichol, César G. Albariño, Christina F. Spiropoulou

PLOS Pathogens: published May 1, 2015 | https://doi.org/10.1371/journal.ppat.1004879

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