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RNA structure

Computational analysis of the effect of a binding protein (RbpA) on the dynamics of Mycobacterium tuberculosis RNA polymerase assembly

Sneha Bheemireddy, Ramanathan Sowdhamini, Narayanaswamy Srinivasan

published 30 Jan 2025

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Aligned membranes regulate wound healing via MMP12 secreted by macrophages

Hongli Ma, Limin Gong, Xi Yang, Hui Fang, Jiacai He, Chenbing Wang

published 15 Jan 2025

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Next-generation sequencing protocol of hematopoietic stem cells (HSCs). Step-by-step overview and troubleshooting guide

Justyna Jarczak, Kamila Bujko, Katarzyna Brzeźniakiewicz-Janus, Mariusz Ratajczak, Magdalena Kucia

published 09 Jan 2025

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A physically inspired approach to coarse-graining transcriptomes reveals the dynamics of aging

Tao Li, Madhav Mani

published 29 Oct 2024

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Engineered red Opto-mGluR6 Opsins, a red-shifted optogenetic excitation tool, an in vitro study

Hoda Shamsnajafabadi, Zahra-Soheila Soheili, Mehdi Sadeghi, Shahram Samiee, Pouria Ghasemi, Mohammad Ismail Zibaii, Hamid Gholami Pourbadie, Hamid Ahmadieh, Ehsan Ranaei Pirmardan, Najmeh Salehi, Dorsa Samiee, Ali Kashanian

published 24 Oct 2024

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GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

published 01 Oct 2024

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A novel viral RNA detection method based on the combined use of trans-acting ribozymes and HCR-FRET analyses

Leonardo Ferreira da Silva, Aisel Valle Garay, Pedro Felipe Queiroz, Sophia Garcia de Resende, Mayna Gomide, Izadora Cristina Moreira de Oliveira, Amanda Souza Bernasol, Anibal Arce, Liem Canet Santos, Fernando Torres, Ildinete Silva-Pereira, Sonia Maria de Freitas, Cíntia Marques Coelho

published 26 Sep 2024

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Peptide nucleic acids can form hairpins and bind RNA-binding proteins

Yichen Zhong, Lorna Wilkinson-White, Esther Zhang, Biswaranjan Mohanty, Belinda B. Zhang, Madeline S. McRae, Rachel Luo, Thomas A. Allport, Anthony P. Duff, Jennifer Zhao, Serene El-Kamand, Mar-Dean Du Plessis, Liza Cubeddu, Roland Gamsjaeger, Sandro F. Ataide, Ann H. Kwan

published 16 Sep 2024

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Comparative analysis of the LARP1 C-terminal DM15 region through Coelomate evolution

Elaine Nguyen, Jahree A. Sosa, Kevin C. Cassidy, Andrea J. Berman

published 27 Aug 2024

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Nationally endorsed learning objectives to improve course design in introductory biology

Kelly M. Hennessey, Scott Freeman

published 15 Aug 2024

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AmiR-P³: An AI-based microRNA prediction pipeline in plants

Sobhan Ataei, Jafar Ahmadi, Sayed-Amir Marashi, Ilia Abolhasani

published 01 Aug 2024

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A label-free G-quadruplex aptamer/gold nanoparticle-based colorimetric biosensor for rapid detection of bovine viral diarrhea virus genotype 1

Parisa Rabiei, Hassan Mohabatkar, Mandana Behbahani

published 30 Jul 2024

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Possible involvement of three-stemmed pseudoknots in regulating translational initiation in human mRNAs

Xiaolan Huang, Zhihua Du

published 22 Jul 2024

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