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RNA structure

GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

published 01 Oct 2024

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A novel viral RNA detection method based on the combined use of trans-acting ribozymes and HCR-FRET analyses

Leonardo Ferreira da Silva, Aisel Valle Garay, Pedro Felipe Queiroz, Sophia Garcia de Resende, Mayna Gomide, Izadora Cristina Moreira de Oliveira, Amanda Souza Bernasol, Anibal Arce, Liem Canet Santos, Fernando Torres, Ildinete Silva-Pereira, Sonia Maria de Freitas, Cíntia Marques Coelho

published 26 Sep 2024

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Peptide nucleic acids can form hairpins and bind RNA-binding proteins

Yichen Zhong, Lorna Wilkinson-White, Esther Zhang, Biswaranjan Mohanty, Belinda B. Zhang, Madeline S. McRae, Rachel Luo, Thomas A. Allport, Anthony P. Duff, Jennifer Zhao, Serene El-Kamand, Mar-Dean Du Plessis, Liza Cubeddu, Roland Gamsjaeger, Sandro F. Ataide, Ann H. Kwan

published 16 Sep 2024

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Comparative analysis of the LARP1 C-terminal DM15 region through Coelomate evolution

Elaine Nguyen, Jahree A. Sosa, Kevin C. Cassidy, Andrea J. Berman

published 27 Aug 2024

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Nationally endorsed learning objectives to improve course design in introductory biology

Kelly M. Hennessey, Scott Freeman

published 15 Aug 2024

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AmiR-P³: An AI-based microRNA prediction pipeline in plants

Sobhan Ataei, Jafar Ahmadi, Sayed-Amir Marashi, Ilia Abolhasani

published 01 Aug 2024

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A label-free G-quadruplex aptamer/gold nanoparticle-based colorimetric biosensor for rapid detection of bovine viral diarrhea virus genotype 1

Parisa Rabiei, Hassan Mohabatkar, Mandana Behbahani

published 30 Jul 2024

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Possible involvement of three-stemmed pseudoknots in regulating translational initiation in human mRNAs

Xiaolan Huang, Zhihua Du

published 22 Jul 2024

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Practical diets for California yellowtail, Seriola dorsalis: Use of advanced soybean meal products on growth performance, body composition, intestinal morphology, and immune gene expression

Abdulmalik A. Oladipupo, Kevin R. Stuart, Timothy J. Bruce, Mark A. Drawbridge, D. Allen Davis

published 07 Jun 2024

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Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure

Anne R. Shim, Jane Frederick, Emily M. Pujadas, Tiffany Kuo, I. Chae Ye, Joshua A. Pritchard, Cody L. Dunton, Paola Carrillo Gonzalez, Nicolas Acosta, Surbhi Jain, Nicholas M. Anthony, Luay M. Almassalha, Igal Szleifer, Vadim Backman

published 28 May 2024

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Transcriptomic and proteomic analysis of the virulence inducing effect of ciprofloxacin on enterohemorrhagic Escherichia coli

Anne Cecilie Riihonen Kijewski, Ingun Lund Witsø, Arvind Y. M. Sundaram, Ola Brønstad Brynildsrud, Kristin Pettersen, Eirik Byrkjeflot Anonsen, Jan Haug Anonsen, Marina Elisabeth Aspholm

published 24 May 2024

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Unveiling hidden structural patterns in the SARS-CoV-2 genome: Computational insights and comparative analysis

Alison Ziesel, Hosna Jabbari

published 04 Apr 2024

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De novo prediction of RNA 3D structures with deep generative models

Julius Ramakers, Christopher Frederik Blum, Sabrina König, Stefan Harmeling, Markus Kollmann

published 15 Feb 2024

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