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RNA alignment

Comparison of whole transcriptome sequencing of fresh, frozen, and formalin-fixed, paraffin-embedded cardiac tissue

Stine Bøttcher Jacobsen, Jacob Tfelt-Hansen, [ ... ], Niels Morling

Crystal structure of an RNA/DNA strand exchange junction

Joshua C. Cofsky, Gavin J. Knott, Christine L. Gee, Jennifer A. Doudna

RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition

Shunfu Mao, Lior Pachter, David Tse, Sreeram Kannan

The L motifs of two moss pentatricopeptide repeat proteins are involved in RNA editing but predominantly not in RNA recognition

Takuya Matsuda, Mamoru Sugita, Mizuho Ichinose

RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment

Amir H. Bayegan, Peter Clote

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

Andrew M. Smith, Miten Jain, [ ... ], Mark Akeson

RNA variant identification discrepancy among splice-aware alignment algorithms

Ji Hyung Hong, Yoon Ho Ko, Keunsoo Kang

Assessing the accuracy of blood RNA profiles to identify patients with post-concussion syndrome: A pilot study in a military patient population

Jimmaline J. Hardy, Scott. R. Mooney, [ ... ], Robert Meller

aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events

Thomas Harrison, Jaime Ruiz, [ ... ], Christina Boucher

CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking

Lei Hua, Yang Song, [ ... ], Tamar Schlick

miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy

Alexander S. Baras, Christopher J. Mitchell, [ ... ], Marc K. Halushka

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Corinna Theis, Craig L. Zirbel, [ ... ], Jan Gorodkin

The Gonococcal Transcriptome during Infection of the Lower Genital Tract in Women

Ryan McClure, Kathleen Nudel, [ ... ], Caroline A. Genco

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