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Pseudoknots

Possible involvement of three-stemmed pseudoknots in regulating translational initiation in human mRNAs

Xiaolan Huang, Zhihua Du

Comparative analysis of RNA secondary structure accuracy on predicted RNA 3D models

Mandar Kulkarni, Jayaraman Thangappan, Indrajit Deb, Sangwook Wu

jViz.RNA 4.0—Visualizing pseudoknots and RNA editing employing compressed tree graphs

Boris Shabash, Kay C. Wiese

RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model

Hosna Jabbari, Ian Wark, Carlo Montemagno

Impact of the structural integrity of the three-way junction of adenovirus VA_I RNA on PKR inhibition

Edis Dzananovic, Astha, [ ... ], Sean A. McKenna

Accurate Classification of RNA Structures Using Topological Fingerprints

Jiajie Huang, Kejie Li, Michael Gribskov

Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic

Amirhossein Manzourolajdad, Mileidy Gonzalez, John L. Spouge

Mutations Designed by Ensemble Defect to Misfold Conserved RNA Structures of Influenza A Segments 7 and 8 Affect Splicing and Attenuate Viral Replication in Cell Culture

Tian Jiang, Aitor Nogales, [ ... ], Douglas H Turner

Inhibition of Hepatitis C Virus in Mice by a Small Interfering RNA Targeting a Highly Conserved Sequence in Viral IRES Pseudoknot

Jae-Su Moon, Seung-Hoon Lee, [ ... ], Jong-Won Oh

Free Energy Landscape and Multiple Folding Pathways of an H-Type RNA Pseudoknot

Yunqiang Bian, Jian Zhang, [ ... ], Wei Wang

TBI Server: A Web Server for Predicting Ion Effects in RNA Folding

Yuhong Zhu, Zhaojian He, Shi-Jie Chen

Vfold: A Web Server for RNA Structure and Folding Thermodynamics Prediction

Xiaojun Xu, Peinan Zhao, Shi-Jie Chen

Insights into Ligand Binding to PreQ₁ Riboswitch Aptamer from Molecular Dynamics Simulations

Zhou Gong, Yunjie Zhao, [ ... ], Yi Xiao

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