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RNA structure

Mutational Dissection of Telomeric DNA Binding Requirements of G4 Resolvase 1 Shows that G4-Structure and Certain 3’-Tail Sequences Are Sufficient for Tight and Complete Binding

Philip J. Smaldino, Eric D. Routh, [ ... ], James P. Vaughn

Assessing Dissimilarity Measures for Sample-Based Hierarchical Clustering of RNA Sequencing Data Using Plasmode Datasets

Pablo D. Reeb, Sergio J. Bramardi, Juan P. Steibel

Structural Insights Reveal the Dynamics of the Repeating r(CAG) Transcript Found in Huntington’s Disease (HD) and Spinocerebellar Ataxias (SCAs)

Arpita Tawani, Amit Kumar

The Cold Shock Domain of YB-1 Segregates RNA from DNA by Non-Bonded Interactions

Vladislav Kljashtorny, Stanislav Nikonov, [ ... ], Philippe Manivet

Two Adhesive Sites Can Enhance the Knotting Probability of DNA

Saeed Najafi, Raffaello Potestio

ITS2 Secondary Structure Improves Discrimination between Medicinal “Mu Tong” Species when Using DNA Barcoding

Wei Zhang, Yuan Yuan, [ ... ], Luqi Huang

Repeat Associated Non-AUG Translation (RAN Translation) Dependent on Sequence Downstream of the ATXN2 CAG Repeat

Daniel R. Scoles, Mi H. T. Ho, [ ... ], Stefan M. Pulst

Towards Antiviral shRNAs Based on the AgoshRNA Design

Ying Poi Liu, Margarete Karg, Elena Herrera-Carrillo, Ben Berkhout

Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures

Yinghan Fu, Zhenjiang Zech Xu, [ ... ], David H. Mathews

Free Energy Landscape and Multiple Folding Pathways of an H-Type RNA Pseudoknot

Yunqiang Bian, Jian Zhang, [ ... ], Wei Wang

Interaction of Sulforaphane with DNA and RNA

Farzaneh Abassi Joozdani, Faramarz Yari, Parvaneh Abassi Joozdani, Shohreh Nafisi

Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data

David L. A. Wood, Katia Nones, [ ... ], Sean M. Grimmond

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology

Nestoras Karathanasis, Ioannis Tsamardinos, Panayiota Poirazi

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