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RNA structure

The Ebola virus VP35 protein binds viral immunostimulatory and host RNAs identified through deep sequencing

Kari A. Dilley, Alexander A. Voorhies, Priya Luthra, Vinita Puri, Timothy B. Stockwell, Hernan Lorenzi, Christopher F. Basler, Reed S. Shabman

published 21 Jun 2017

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The monoclonal S9.6 antibody exhibits highly variable binding affinities towards different R-loop sequences

Fabian König, Thomas Schubert, Gernot Längst

published 08 Jun 2017

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JNSViewer—A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

Jieming Shi, Xi Li, Min Dong, Mitchell Graham, Nehul Yadav, Chun Liang

published 05 Jun 2017

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In silico discovery of substituted pyrido[2,3-d]pyrimidines and pentamidine-like compounds with biological activity in myotonic dystrophy models

Àlex L. González, Piotr Konieczny, Beatriz Llamusi, Estefanía Delgado-Pinar, José I. Borrell, Jordi Teixidó, Enrique García-España, Manuel Pérez-Alonso, Roger Estrada-Tejedor, Rubén Artero

published 05 Jun 2017

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Structural basis for 5'-ETS recognition by Utp4 at the early stages of ribosome biogenesis

Fabiola R. Calviño, Markus Kornprobst, Géza Schermann, Fabienne Birkle, Klemens Wild, Tamas Fischer, Ed Hurt, Yasar Luqman Ahmed, Irmgard Sinning

published 02 Jun 2017

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Chemical and structural characterization of a model Post-Termination Complex (PoTC) for the ribosome recycling reaction: Evidence for the release of the mRNA by RRF and EF-G

Nobuhiro Iwakura, Takeshi Yokoyama, Fabio Quaglia, Kaoru Mitsuoka, Kazuhiro Mio, Hideki Shigematsu, Mikako Shirouzu, Akira Kaji, Hideko Kaji

published 24 May 2017

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Ectopically expressed Slc34a2a sense-antisense transcripts cause a cerebellar phenotype in zebrafish embryos depending on RNA complementarity and Dicer

Monica J. Piatek, Victoria Henderson, Amy Fearn, Bill Chaudhry, Andreas Werner

published 18 May 2017

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DNA recognition by an RNA-guided bacterial Argonaute

Kevin W. Doxzen, Jennifer A. Doudna

published 17 May 2017

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Molecular phylogeny of Oncaeidae (Copepoda) using nuclear ribosomal internal transcribed spacer (ITS rDNA)

Iole Di Capua, Fulvio Maffucci, Raimondo Pannone, Maria Grazia Mazzocchi, Elio Biffali, Alberto Amato

published 25 Apr 2017

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Molecular simulations and Markov state modeling reveal the structural diversity and dynamics of a theophylline-binding RNA aptamer in its unbound state

Becka M. Warfield, Peter C. Anderson

published 24 Apr 2017

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The fungal natural product azaphilone-9 binds to HuR and inhibits HuR-RNA interaction in vitro

Kawaljit Kaur, Xiaoqing Wu, James K. Fields, David K. Johnson, Lan Lan, Miranda Pratt, Amber D. Somoza, Clay C. C. Wang, John Karanicolas, Berl R. Oakley, Liang Xu, Roberto N. De Guzman

published 17 Apr 2017

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A pair-conformation-dependent scoring function for evaluating 3D RNA-protein complex structures

Haotian Li, Yangyu Huang, Yi Xiao

published 30 Mar 2017

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The impact of RNA secondary structure on read start locations on the Illumina sequencing platform

Adam Price, Jaishree Garhyan, Cynthia Gibas

published 28 Feb 2017

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