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RNA structure

RNA structural analysis of the MYC mRNA reveals conserved motifs that affect gene expression

Collin A. O’Leary, Ryan J. Andrews, Van S. Tompkins, Jonathan L. Chen, Jessica L. Childs-Disney, Matthew D. Disney, Walter N. Moss

published 17 Jun 2019

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Structural prediction of RNA switches using conditional base-pair probabilities

Amirhossein Manzourolajdad, John L. Spouge

published 12 Jun 2019

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FMRP - G-quadruplex mRNA - miR-125a interactions: Implications for miR-125a mediated translation regulation of PSD-95 mRNA

Brett DeMarco, Snezana Stefanovic, Allison Williams, Kathryn R. Moss, Bart R. Anderson, Gary J. Bassell, Mihaela Rita Mihailescu

published 21 May 2019

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Structural comparison strengthens the higher-order classification of proteases related to chymotrypsin

Heli A. M. Mönttinen, Janne J. Ravantti, Minna M. Poranen

published 17 May 2019

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Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

Andrew M. Smith, Miten Jain, Logan Mulroney, Daniel R. Garalde, Mark Akeson

published 16 May 2019

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jViz.RNA 4.0—Visualizing pseudoknots and RNA editing employing compressed tree graphs

Boris Shabash, Kay C. Wiese

published 06 May 2019

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Prediction of binding property of RNA-binding proteins using multi-sized filters and multi-modal deep convolutional neural network

Taesu Chung, Dongsup Kim

published 26 Apr 2019

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Specific interaction of zinc finger protein Com with RNA and the crystal structure of a self-complementary RNA duplex recognized by Com

Martyna Nowacka, Humberto Fernandes, Agnieszka Kiliszek, Agata Bernat, Grzegorz Lach, Janusz M. Bujnicki

published 25 Apr 2019

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Heavy-atom labeling of RNA by PLOR for de novo crystallographic phasing

Jason R. Stagno, Ping Yu, Marzena A. Dyba, Yun-Xing Wang, Yu Liu

published 15 Apr 2019

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DNA aptamers for the recognition of HMGB1 from Plasmodium falciparum

Diego F. Joseph, Jose A. Nakamoto, Oscar Andree Garcia Ruiz, Katherin Peñaranda, Ana Elena Sanchez-Castro, Pablo Soriano Castillo, Pohl Milón

published 09 Apr 2019

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The human adenovirus type 5 E1B 55kDa protein interacts with RNA promoting timely DNA replication and viral late mRNA metabolism

Berto Tejera, Raúl E. López, Paloma Hidalgo, Reinier Cárdenas, Grisel Ballesteros, Lina Rivillas, Leidys French, Carlos Amero, Nina Pastor, Ángel Santiago, Peter Groitl, Thomas Dobner, Ramón A. Gonzalez

published 03 Apr 2019

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An unconventional RNA-based thermosensor within the 5’ UTR of Staphylococcus aureus cidA

Hebaallaha Hussein, Megan E. Fris, Ahmed H. Salem, Richard E. Wiemels, Raeven A. Bastock, Francesco Righetti, Caleb A. Burke, Franz Narberhaus, Ronan K. Carroll, Nahla S. Hassan, Saleh A. Mohamed, Afaf S. Fahmy, Erin R. Murphy

published 01 Apr 2019

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In-stem molecular beacon targeted to a 5′-region of tRNA inclusive of the D arm that detects mature tRNA with high sensitivity

Yuichi Miyoshi, Takashi Ohtsuki, Hiromu Kashida, Hiroyuki Asanuma, Kazunori Watanabe

published 29 Jan 2019

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