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Protein structure comparison

Network of interactions between the tumor necrosis factor superfamily members and small S100 proteins

Victoria A. Rastrygina, Evgenia I. Deryusheva, [ ... ], Sergei E. Permyakov

Comparative evolutionary pharmacogenomics of human prostaglandin-endoperoxide synthase paralogs identifies population-structured coding variation and protein-contextual candidates in N-terminal leader-sequence and catalytic-channel regions

Reuben S. Maghembe

ProteoMapper: Alignment-aware identification and quantitative analysis of contextual motif–domain patterns in protein families

Sifullah Mahmud Sefa, Joyeeta Sarkar, Arif Hasan Khan Robin, Machbah Uddin

Epidemiological and genomic analysis of the dengue virus isolate from Jeddah, Saudi Arabia: Implications for future therapeutic development

Shymaa Damfo, Eitezaz Abdulshakoor Zaki, [ ... ], Mona A. Almusawi

Prediction of pre- and postfusion conformations of class I fusion proteins with AlphaFold2

Sevilay Gülesen, Victoria Most, Clara T. Schoeder, Jens Meiler

Structural bioinformatic studies of eight integral transmembrane NADPH oxidases and their AlphaFold 3 predicted QTY analogs with reduced hydrophobicity

Tutu Hu, Rick Cheng, Edward Chen, Shuguang Zhang

Predicting unknown binding sites for transition-metal-based compounds in proteins

Andrea Levy, Ursula Rothlisberger

Identification of neuronatin as a SERCA2b regulin-like protein and assessment of its aggregation propensity via coarse grained simulations

Omar Ben Mariem, Lara Coppi, [ ... ], Maurizio Crestani

Comparative analysis of the diversity within the B. bronchiseptica fimX locus

Tracy L. Nicholson, Sarah M. Shore

A novel mRNA-based multiepitope vaccine candidate against Cryptosporidium hominis and Cryptosporidium parvum employing reverse-vaccinology and immunoinformatics approaches

Ahmad Abdullah Mahdeen, Imam Hossain, [ ... ], Sajedul Islam

Pathogenic KRAS variants disrupt structure and dynamics: Insights from integrated computational analyses

Saqib Ishaq, Aizaz Ali, [ ... ], Amin Ullah

Mapping SBiP1 protein-protein interactions in Symbiodinium microadriaticum CassKB8 using the Yeast Two-Hybrid assay and structural prediction

Estefanía Morales-Ruiz, Tania Islas-Flores, Marco A. Villanueva

Classification of virulence factors based on dual-channel neural networks with pre-trained language models

Guanghui Li, Peiyang Song, Jiawei Luo, Cheng Liang

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