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Protein structure comparison

Structure bioinformatics of eight human ATP synthase F₀ subunits and their AlphaFold3-predicted reduced-hydrophobicity QTY analogues

Ziyu Wang, Edward Chen, Shuguang Zhang

published 23 Oct 2026

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Network of interactions between the tumor necrosis factor superfamily members and small S100 proteins

Victoria A. Rastrygina, Evgenia I. Deryusheva, Alexey S. Kazakov, Andrey S. Sokolov, Maria E. Permyakova, Ekaterina A. Litus, Vladimir N. Uversky, Eugene A. Permyakov, Sergei E. Permyakov

published 29 Sep 2026

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Comparative evolutionary pharmacogenomics of human prostaglandin-endoperoxide synthase paralogs identifies population-structured coding variation and protein-contextual candidates in N-terminal leader-sequence and catalytic-channel regions

Reuben S. Maghembe

published 25 Sep 2026

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ProteoMapper: Alignment-aware identification and quantitative analysis of contextual motif–domain patterns in protein families

Sifullah Mahmud Sefa, Joyeeta Sarkar, Arif Hasan Khan Robin, Machbah Uddin

published 10 Aug 2026

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Epidemiological and genomic analysis of the dengue virus isolate from Jeddah, Saudi Arabia: Implications for future therapeutic development

Shymaa Damfo, Eitezaz Abdulshakoor Zaki, Mohammed Yahya Marouf, Mohammed Abdulmajeed Alghamdi, Khader Saleh Alghamdi, Bader Mohammed Alqarni, Mona A. Almusawi

published 16 Jul 2026

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Prediction of pre- and postfusion conformations of class I fusion proteins with AlphaFold2

Sevilay Gülesen, Victoria Most, Clara T. Schoeder, Jens Meiler

published 16 Jun 2026

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Structural bioinformatic studies of eight integral transmembrane NADPH oxidases and their AlphaFold 3 predicted QTY analogs with reduced hydrophobicity

Tutu Hu, Rick Cheng, Edward Chen, Shuguang Zhang

published 10 Jun 2026

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Predicting unknown binding sites for transition-metal-based compounds in proteins

Andrea Levy, Ursula Rothlisberger

published 09 Jun 2026

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Identification of neuronatin as a SERCA2b regulin-like protein and assessment of its aggregation propensity via coarse grained simulations

Omar Ben Mariem, Lara Coppi, Emma De Fabiani, Ivano Eberini, Maurizio Crestani

published 09 Apr 2026

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Comparative analysis of the diversity within the B. bronchiseptica fimX locus

Tracy L. Nicholson, Sarah M. Shore

published 02 Mar 2026

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A novel mRNA-based multiepitope vaccine candidate against Cryptosporidium hominis and Cryptosporidium parvum employing reverse-vaccinology and immunoinformatics approaches

Ahmad Abdullah Mahdeen, Imam Hossain, Md. Habib Ullah Masum, T. M. Fazla Rabbi, Sajedul Islam

published 25 Feb 2026

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Pathogenic KRAS variants disrupt structure and dynamics: Insights from integrated computational analyses

Saqib Ishaq, Aizaz Ali, Obaid Habib, Shabir Ahmad Usmani, Irshad Ur Rehman, Abdul Aziz, Yasir Ali, Ajaz Ahmad, Amin Ullah

published 11 Feb 2026

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Mapping SBiP1 protein-protein interactions in Symbiodinium microadriaticum CassKB8 using the Yeast Two-Hybrid assay and structural prediction

Estefanía Morales-Ruiz, Tania Islas-Flores, Marco A. Villanueva

published 06 Feb 2026

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