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Macromolecular structure analysis

Mammalian MicroRNA Prediction through a Support Vector Machine Model of Sequence and Structure

Ying Sheng, Pär G. Engström, Boris Lenhard

published 26 Sep 2007

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Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding

Wayne K. Dawson, Kazuya Fujiwara, Gota Kawai

published 19 Sep 2007

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Early Evolution of Ionotropic GABA Receptors and Selective Regimes Acting on the Mammalian-Specific Theta and Epsilon Subunits

Christopher J. Martyniuk, Stéphane Aris-Brosou, Guy Drouin, Joel Cahn, Vance L. Trudeau

published 19 Sep 2007

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Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations

Sunhwan Jo, Taehoon Kim, Wonpil Im

published 12 Sep 2007

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An All-Atom Model of the Chromatin Fiber Containing Linker Histones Reveals a Versatile Structure Tuned by the Nucleosomal Repeat Length

Hua Wong, Jean-Marc Victor, Julien Mozziconacci

published 12 Sep 2007

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Preference of Small Molecules for Local Minimum Conformations when Binding to Proteins

Qi Wang, Yuan-Ping Pang

published 05 Sep 2007

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A Framework for Exploring Functional Variability in Olfactory Receptor Genes

Orna Man, David C. Willhite, Chiquito J. Crasto, Gordon M. Shepherd, Yoav Gilad

published 01 Aug 2007

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A Modern Mode of Activation for Nucleic Acid Enzymes

Dominique Lévesque, Francis P. Brière, Jean-Pierre Perreault

published 25 Jul 2007

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HIV-Specific Probabilistic Models of Protein Evolution

David C. Nickle, Laura Heath, Mark A. Jensen, Peter B. Gilbert, James I. Mullins, Sergei L. Kosakovsky Pond

published 06 Jun 2007

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The Stability and Formation of Native Proteins from Unfolded Monomers Is Increased through Interactions with Unrelated Proteins

Claudia Rodríguez-Almazán, Francisco J. Torner, Miguel Costas, Ruy Pérez-Montfort, Marieta Tuena de Gómez-Puyou, Armando Gómez Puyou

published 06 Jun 2007

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Structural Insights into the Evolution of a Non-Biological Protein: Importance of Surface Residues in Protein Fold Optimization

Matthew D. Smith, Matthew A. Rosenow, Meitian Wang, James P. Allen, Jack W. Szostak, John C. Chaput

published 23 May 2007

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Calculation of the Free Energy and Cooperativity of Protein Folding

Alex Kentsis, Tatyana Gindin, Mihaly Mezei, Roman Osman

published 16 May 2007

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Combinatorial Computational Approaches to Identify Tetracycline Derivatives as Flavivirus Inhibitors

Jinn-Moon Yang, Yan-Fu Chen, Yu-Yin Tu, Kuei-Rong Yen, Yun-Liang Yang

published 09 May 2007

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