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Macromolecular structure analysis

Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?

Natalie Ward, Gabriel Moreno-Hagelsieb

Automated Builder and Database of Protein/Membrane Complexes for Molecular Dynamics Simulations

Sunhwan Jo, Taehoon Kim, Wonpil Im

Use of Natural Products as Chemical Library for Drug Discovery and Network Pharmacology

Jiangyong Gu, Yuanshen Gui, [ ... ], Xiaojie Xu

A Systems Biology Strategy Reveals Biological Pathways and Plasma Biomarker Candidates for Potentially Toxic Statin-Induced Changes in Muscle

Reijo Laaksonen, Mikko Katajamaa, [ ... ], Matej Orešič

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

Gemma Henderson, Faith Cox, [ ... ], Peter H. Janssen

Virtual Screening for HIV Protease Inhibitors: A Comparison of AutoDock 4 and Vina

Max W. Chang, Christian Ayeni, Sebastian Breuer, Bruce E. Torbett

Crystal Structure of Enhanced Green Fluorescent Protein to 1.35 Å Resolution Reveals Alternative Conformations for Glu222

James A. J. Arpino, Pierre J. Rizkallah, D. Dafydd Jones

Ribosomal History Reveals Origins of Modern Protein Synthesis

Ajith Harish, Gustavo Caetano-Anollés

RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite

Sarel J. Fleishman, Andrew Leaver-Fay, [ ... ], David Baker

Phylo: A Citizen Science Approach for Improving Multiple Sequence Alignment

Alexander Kawrykow, Gary Roumanis, [ ... ], Jérôme Waldispühl

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

Ago2 Immunoprecipitation Identifies Predicted MicroRNAs in Human Embryonic Stem Cells and Neural Precursors

Loyal A. Goff, Jonathan Davila, [ ... ], Ronald P. Hart

Aspartame Sensitivity? A Double Blind Randomised Crossover Study

Thozhukat Sathyapalan, Natalie J. Thatcher, [ ... ], Fraser Courts

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