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Genome annotation

Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation

Chuming Chen, Darren A. Natale, [ ... ], Raja Mazumder

Using Functional Annotation for the Empirical Determination of Bayes Factors for Genome-Wide Association Study Analysis

Jo Knight, Michael R. Barnes, Gerome Breen, Michael E. Weale

An Integrated Approach for Finding Overlooked Genes in Shigella

Junping Peng, Jian Yang, Qi Jin

Transcriptome Analysis of Female and Male Xiphophorus maculatus Jp 163 A

Ziping Zhang, Yilei Wang, [ ... ], Ronald B. Walter

Predicting Protein Phenotypes Based on Protein-Protein Interaction Network

Lele Hu, Tao Huang, Xiao-Jun Liu, Yu-Dong Cai

HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

Charles Richard Bradshaw, Vineeth Surendranath, [ ... ], Bianca Hermine Habermann

TargetMine, an Integrated Data Warehouse for Candidate Gene Prioritisation and Target Discovery

Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi

Genome-Wide Identification, Characterization and Phylogenetic Analysis of the Rice LRR-Kinases

Xinli Sun, Guo-Liang Wang

AGeS: A Software System for Microbial Genome Sequence Annotation

Kamal Kumar, Valmik Desai, [ ... ], Jaques Reifman

Ratio-Based Analysis of Differential mRNA Processing and Expression of a Polyadenylation Factor Mutant pcfs4 Using Arabidopsis Tiling Microarray

Jianti Zheng, Denghui Xing, [ ... ], Qingshun Quinn Li

Mitochondrial Genome Sequence and Expression Profiling for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae)

Venu M. Margam, Brad S. Coates, [ ... ], Barry R. Pittendrigh

Considering Transposable Element Diversification in De Novo Annotation Approaches

Timothée Flutre, Elodie Duprat, Catherine Feuillet, Hadi Quesneville

Genome-Wide Polymorphism and Comparative Analyses in the White-Tailed Deer (Odocoileus virginianus): A Model for Conservation Genomics

Christopher M. Seabury, Eric K. Bhattarai, [ ... ], Paul M. Seabury

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