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Genome annotation

Optimizing a Massive Parallel Sequencing Workflow for Quantitative miRNA Expression Analysis

Francesca Cordero, Marco Beccuti, [ ... ], Raffaele A. Calogero

Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing

Jie Xiong, Xingyi Lu, [ ... ], Wei Miao

Knowledge-Based Reconstruction of mRNA Transcripts with Short Sequencing Reads for Transcriptome Research

Junhee Seok, Weihong Xu, [ ... ], Wenzhong Xiao

In Silico Insights into the Symbiotic Nitrogen Fixation in Sinorhizobium meliloti via Metabolic Reconstruction

Hansheng Zhao, Mao Li, [ ... ], Jing Wang

GSVD Comparison of Patient-Matched Normal and Tumor aCGH Profiles Reveals Global Copy-Number Alterations Predicting Glioblastoma Multiforme Survival

Cheng H. Lee, Benjamin O. Alpert, Preethi Sankaranarayanan, Orly Alter

RNA-Seq Based Transcriptional Map of Bovine Respiratory Disease Pathogen “Histophilus somni 2336”

Ranjit Kumar, Mark L. Lawrence, [ ... ], Bindu Nanduri

Isoform Diversity and Regulation in Peripheral and Central Neurons Revealed through RNA-Seq

Jessica K. Lerch, Frank Kuo, [ ... ], Vance P. Lemmon

Gene Discovery in the Threatened Elkhorn Coral: 454 Sequencing of the Acropora palmata Transcriptome

Nicholas R. Polato, J. Cristobal Vera, Iliana B. Baums

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

The Impact of Focused Gene Ontology Curation of Specific Mammalian Systems

Yasmin Alam-Faruque, Rachael P. Huntley, [ ... ], Ruth C. Lovering

Analysis of Transcriptome Differences between Resistant and Susceptible Strains of the Citrus Red Mite Panonychus citri (Acari: Tetranychidae)

Bin Liu, Gaofei Jiang, [ ... ], Chun Ran

Proteogenomic Analysis of Bacteria and Archaea: A 46 Organism Case Study

Eli Venter, Richard D. Smith, Samuel H. Payne

Deep Sequencing of MYC DNA-Binding Sites in Burkitt Lymphoma

Volkhard Seitz, Peter Butzhammer, [ ... ], Michael Hummel

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