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Genome annotation

The Yin and Yang of Yeast Transcription: Elements of a Global Feedback System between Metabolism and Chromatin

Rainer Machné, Douglas B. Murray

A Simple Method for Analyzing Exome Sequencing Data Shows Distinct Levels of Nonsynonymous Variation for Human Immune and Nervous System Genes

Jan Freudenberg, Peter K. Gregersen, Yun Freudenberg-Hua

The Genome of Ganderma lucidum Provide Insights into Triterpense Biosynthesis and Wood Degradation

Dongbo Liu, Jing Gong, [ ... ], Xingyao Xiong

Genome Sequence of Erythromelalgia-Related Poxvirus Identifies it as an Ectromelia Virus Strain

Jorge D. Mendez-Rios, Craig A. Martens, [ ... ], Bernard Moss

Clusters of Ancestrally Related Genes That Show Paralogy in Whole or in Part Are a Major Feature of the Genomes of Humans and Other Species

Michael B. Walker, Benjamin L. King, Kenneth Paigen

Annotation of the Transcriptome from Taenia pisiformis and Its Comparative Analysis with Three Taeniidae Species

Deying Yang, Yan Fu, [ ... ], Guangyou Yang

Discovery of Potential piRNAs from Next Generation Sequences of the Sexually Mature Porcine Testes

Gang Liu, Bin Lei, [ ... ], Fenge Li

Functional Annotation of Hierarchical Modularity

Kanchana Padmanabhan, Kuangyu Wang, Nagiza F. Samatova

Annotation of the M. tuberculosis Hypothetical Orfeome: Adding Functional Information to More than Half of the Uncharacterized Proteins

Tobias Doerks, Vera van Noort, Pablo Minguez, Peer Bork

Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae

Alexandra C. Schrimpe-Rutledge, Marcus B. Jones, [ ... ], Joshua N. Adkins

Deep Annotation of Populus trichocarpa microRNAs from Diverse Tissue Sets

Joshua R. Puzey, Amir Karger, Michael Axtell, Elena M. Kramer

Mitochondrial Pseudogenes in the Nuclear Genomes of Drosophila

Hubert H. Rogers, Sam Griffiths-Jones

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data

Daniel R. Mende, Alison S. Waller, [ ... ], Peer Bork

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