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Database and informatics methods

Analysis of Expressed Sequence Tags of the Cyclically Parthenogenetic Rotifer Brachionus plicatilis

Koushirou Suga, David Mark Welch, [ ... ], Atsushi Hagiwara

A Novel Lineage of Proteobacteria Involved in Formation of Marine Fe-Oxidizing Microbial Mat Communities

David Emerson, Jeremy A. Rentz, [ ... ], Craig L. Moyer

Prediction of Cyclin-Dependent Kinase Phosphorylation Substrates

Emmanuel J. Chang, Rashida Begum, Brian T. Chait, Terry Gaasterland

Complete Mitochondrial Genome Sequence of Three Tetrahymena Species Reveals Mutation Hot Spots and Accelerated Nonsynonymous Substitutions in Ymf Genes

Mike M. Moradian, Denis Beglaryan, Jill M. Skozylas, Varand Kerikorian

Molecular Evolution and Functional Divergence of the Ca²⁺ Sensor Protein in Store-operated Ca²⁺ Entry: Stromal Interaction Molecule

Xinjiang Cai

Indexing Strategies for Rapid Searches of Short Words in Genome Sequences

Christian Iseli, Giovanna Ambrosini, Philipp Bucher, C. Victor Jongeneel

Real-Time Definition of Non-Randomness in the Distribution of Genomic Events

Ulrich Abel, Annette Deichmann, [ ... ], Manfred Schmidt

Genome-Wide Identification of Alternatively Spliced mRNA Targets of Specific RNA-Binding Proteins

Mark D. Robida, Andrew Rahn, Ravinder Singh

Blueprint for a High-Performance Biomaterial: Full-Length Spider Dragline Silk Genes

Nadia A. Ayoub, Jessica E. Garb, [ ... ], Cheryl Y. Hayashi

Pathogen Proteins Eliciting Antibodies Do Not Share Epitopes with Host Proteins: A Bioinformatics Approach

Isaac Amela, Juan Cedano, Enrique Querol

A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region

W. John Kress, David L. Erickson

HIV-Specific Probabilistic Models of Protein Evolution

David C. Nickle, Laura Heath, [ ... ], Sergei L. Kosakovsky Pond

The Information Coded in the Yeast Response Elements Accounts for Most of the Topological Properties of Its Transcriptional Regulation Network

Duygu Balcan, Alkan Kabakçıoğlu, Muhittin Mungan, Ayşe Erzan

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