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Biological databases

Proteomic machine-learning signatures associated with carotid plaque: A population-based hypothesis-generating study

Anna Szpakowicz, Wojciech Lesiński, [ ... ], Karol A. Kamiński

Proteomic and lipidomic characterization of Hemipyrellia ligurriens larval extracts using LC-MS/MS and GC-MS: Identification of putative antimicrobial molecules and preliminary functional assessment

Pluemkamon Phuwanatsarunya, Sophit Khanthawong, [ ... ], Nophawan Bunchu

Integrated analysis of transcriptomic and proteomic profiles identifies divergent regulatory networks for intramuscular fat in Chinese versus Western Pigs

Caoyan Xu, Pengcheng Shen, [ ... ], Chonglong Wang

Computational screening of oncogenic genetic variations in tumor suppressor proteins driving gastric cancer pathogenesis

Faria Ferdouse Mim, Taslima Akter Sumiya, [ ... ], Shahin Mahmud

GenBank mining reveals novel insights into Rhizobium phylogeny: Identical 16S rRNA sequences are mainly uncoupled from species designation, host plant, and geographic origin: How this search suggested the definition of a direct ‘microbial h-index’

Rosella Muresu, Monica Rodriguez, Andrea Squartini

Whole exome sequencing and cluster analysis reveal that EPB41L4A mutation may trigger tooth agenesis

Tian-Qi Li, Qin Zhang, [ ... ], Xiang-Yu Zhang

Correlation assessment of SARS-CoV-2 variants and their subvariants present in clinical and wastewater samples in Oregon, USA (February 7, 2021 - February 26, 2022) using the Freyja bioinformatics approach

Anirudh Bhatia, Justin Elser, [ ... ], Tyler S. Radniecki

Acute Myeloid Leukemia(AML) proteins for in silico drug design using pharmacophore modeling, molecular docking and molecular dynamics simulation

Partho Bosu, Tonmoy Adhikary, [ ... ], Payer Ahmed

Identifying DNA mutations in Sepia, White, Yellow, and Vestigial genes in D. melanogaster - Integrating inquiry-based experiential learning into undergraduate Genetics Laboratory curriculum

Krishna K. Rentachintala, Catherine A. K. Bricker, Parker R. Jain, Meera Nanjundan

Assessment of generative de novo peptide design methods for G protein-coupled receptors

Hannes Junker, Clara T. Schoeder

Systematic analysis of global O-serotype prevalence of neonatal extraintestinal pathogenic Escherichia coli: A protocol integrating previous research and bioinformatics databases

Dongmiao Zhang, Peicen Zou, [ ... ], Yajuan Wang

Proteomic characterization of adult Fasciola gigantica recovered from naturally infected buffaloes in Punjab Pakistan

Kinza Shahid, Mirza Imran Shahzad, [ ... ], Muhammad Mudasser Nazir

Assessing fish diversity in the Amazon: The impact of primers and reference libraries in eDNA surveys

Shizuka Hashimoto, Sarah V. Carvalho, [ ... ], Tomas Hrbek

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