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Database and informatics methods

Evolutionarily Conserved Protein Sequences of Influenza A Viruses, Avian and Human, as Vaccine Targets

A. T. Heiny, Olivo Miotto, [ ... ], J. Thomas August

Putative Zinc Finger Protein Binding Sites Are Over-Represented in the Boundaries of Methylation-Resistant CpG Islands in the Human Genome

Shicai Fan, Fang Fang, Xuegong Zhang, Michael Q. Zhang

Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks

Jeffrey L. Blanchard, Wei-Yun Wholey, Erin M. Conlon, Pablo J. Pomposiello

NF-κB/Rel-Mediated Regulation of the Neural Fate in Drosophila

Savita Ayyar, Daniela Pistillo, [ ... ], Pat Simpson

DNA Barcoding in the Cycadales: Testing the Potential of Proposed Barcoding Markers for Species Identification of Cycads

Chodon Sass, Damon P. Little, Dennis Wm. Stevenson, Chelsea D. Specht

Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes

Stein Aerts, Jacques van Helden, Olivier Sand, Bassem A. Hassan

Identification and Classification of Hubs in Brain Networks

Olaf Sporns, Christopher J. Honey, Rolf Kötter

Nullomers: Really a Matter of Natural Selection?

Claudia Acquisti, George Poste, David Curtiss, Sudhir Kumar

Conservation, Variability and the Modeling of Active Protein Kinases

James D. R. Knight, Bin Qian, David Baker, Rashmi Kothary

SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Richard J. Edwards, Norman E. Davey, Denis C. Shields

Complete Genomic Characterization of a Pathogenic A.II Strain of Francisella tularensis Subspecies tularensis

Stephen M. Beckstrom-Sternberg, Raymond K. Auerbach, [ ... ], Paul S. Keim

Mammalian MicroRNA Prediction through a Support Vector Machine Model of Sequence and Structure

Ying Sheng, Pär G. Engström, Boris Lenhard

Analysis of Mitochondrial DNA Sequences in Childhood Encephalomyopathies Reveals New Disease-Associated Variants

Aijaz A. Wani, Sajad H. Ahanger, [ ... ], Yogesh S. Shouche

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