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Table of Contents

October 2023

This diminutive isopod crustacean, a predatory marine relative of the pill-bug, swarms in great numbers on surf beaches of NW Europe. Like many other inhabitants of the intertidal zones, Eurydice synchronises its biology to the 12.4h ebb and flow of the tides as well as the natural cycles of light and dark. Only recently are we beginning to dissect the molecular genetic basis of circatidal clocks in marine animals, and Eurydice is a key model in that endeavour. See Lin et al. Download October's cover page.

Image Credit: David Wilcockson

Research Articles

Neurodevelopmental deficits and cell-type-specific transcriptomic perturbations in a mouse model of HNRNPU haploinsufficiency

Sarah A. Dugger, Ryan S. Dhindsa, Gabriela De Almeida Sampaio, Andrew K. Ressler, Elizabeth E. Rafikian, Sabrina Petri, Verity A. Letts, JiaJie Teoh, Junqiang Ye, Sophie Colombo, Yueqing Peng, Mu Yang, Michael J. Boland, Wayne N. Frankel, David B. Goldstein

Microtubules oppose cortical actomyosin-driven membrane ingression during C. elegans meiosis I polar body extrusion

Alyssa R. Quiogue, Eisuke Sumiyoshi, Adam Fries, Chien-Hui Chuang, Bruce Bowerman

Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis

Caroline M. S. Cauret, Danielle C. Jordan, Lindsey M. Kukoly, Sarah R. Burton, Emmanuela U. Anele, Jacek M. Kwiecien, Marie-Theres Gansauge, Sinthu Senthillmohan, Eli Greenbaum, Matthias Meyer, Marko E. Horb, Ben J. Evans

Elevated levels of sphingolipid MIPC in the plasma membrane disrupt the coordination of cell growth with cell wall formation in fission yeast

Alaina H. Willet, Marcin Wos, Maya G. Igarashi, Liping Ren, Lesley A. Turner, Kathleen L. Gould

Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids

Jamie McGowan, Estelle S. Kilias, Elisabet Alacid, James Lipscombe, Benjamin H. Jenkins, Karim Gharbi, Gemy G. Kaithakottil, Iain C. Macaulay, Seanna McTaggart, Sally D. Warring, Thomas A. Richards, Neil Hall, David Swarbreck

Constructing and interpreting a large-scale variant effect map for an ultrarare disease gene: Comprehensive prediction of the functional impact of PSAT1 genotypes

Michael J. Xie, Gareth A. Cromie, Katherine Owens, Martin S. Timour, Michelle Tang, J. Nathan Kutz, Ayman W. El-Hattab, Richard N. McLaughlin Jr., Aimée M. Dudley

Uptake of environmental DNA in Bacillus subtilis occurs all over the cell surface through a dynamic pilus structure

Alexandra Kilb, Marie Burghard-Schrod, Sven Holtrup, Peter L. Graumann

Demographically explicit scans for barriers to gene flow using gIMble

Dominik R. Laetsch, Gertjan Bisschop, Simon H. Martin, Simon Aeschbacher, Derek Setter, Konrad Lohse

Insights into the conservation and diversification of the molecular functions of YTHDF proteins

Daniel Flores-Téllez, Mathias Due Tankmar, Sören von Bülow, Junyu Chen, Kresten Lindorff-Larsen, Peter Brodersen, Laura Arribas-Hernández

Unanticipated domain requirements for Drosophila Wnk kinase in vivo

Prathibha Yarikipati, Sima Jonusaite, John M. Pleinis, Carihann Dominicci Cotto, David Sanchez-Hernandez, Daryl E. Morrison, Suhani Goyal, Jeffrey Schellinger, Clothilde Pénalva, Jennifer Curtiss, Aylin R. Rodan, Andreas Jenny

Transcriptomic comparison of two selective retinal cell ablation paradigms in zebrafish reveals shared and cell-specific regenerative responses

Kevin Emmerich, Steven L. Walker, Guohua Wang, David T. White, Anneliese Ceisel, Fang Wang, Yong Teng, Zeeshaan Chunawala, Gianna Graziano, Saumya Nimmagadda, Meera T. Saxena, Jiang Qian, Jeff S. Mumm

AGAMOUS mediates timing of guard cell formation during gynoecium development

Ailbhe J. Brazel, Róisín Fattorini, Jesse McCarthy, Rainer Franzen, Florian Rümpler, George Coupland, Diarmuid S. Ó’Maoiléidigh

Investigating trait variability of gene co-expression network architecture in brain by controlling for genomic risk of schizophrenia

Eugenia Radulescu, Qiang Chen, Giulio Pergola, Pasquale Di Carlo, Shizhong Han, Joo Heon Shin, Thomas M. Hyde, Joel E. Kleinman, Daniel R. Weinberger

CAG repeat expansion in the Huntington’s disease gene shapes linear and circular RNAs biogenesis

Dilara Ayyildiz, Guendalina Bergonzoni, Alan Monziani, Takshashila Tripathi, Jessica Döring, Emanuela Kerschbamer, Francesca Di Leva, Elia Pennati, Luisa Donini, Marina Kovalenko, Jacopo Zasso, Luciano Conti, Vanessa C. Wheeler, Christoph Dieterich, Silvano Piazza, Erik Dassi, Marta Biagioli

Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family

Tomas Alarcón-Schumacher, Dominik Lücking, Susanne Erdmann

Sensing of H2O2-induced oxidative stress by the UPF factor complex is crucial for activation of catalase-3 expression in Neurospora

Shuangjie Shen, Chengcheng Zhang, Yuanhao Meng, Guofei Cui, Ying Wang, Xiao Liu, Qun He

Genome wide association joint analysis reveals 99 risk loci for pain susceptibility and pleiotropic relationships with psychiatric, metabolic, and immunological traits

Evelina Mocci, Kathryn Ward, James A. Perry, Angela Starkweather, Laura S. Stone, Siobhan M. Schabrun, Cynthia Renn, Susan G. Dorsey, Seth A. Ament

A Rab6 to Rab11 transition is required for dense-core granule and exosome biogenesis in Drosophila secondary cells

Adam Wells, Cláudia C. Mendes, Felix Castellanos, Phoebe Mountain, Tia Wright, S. Mark Wainwright, M. Irina Stefana, Adrian L. Harris, Deborah C. I. Goberdhan, Clive Wilson

lhCLIP reveals the in vivo RNA–RNA interactions recognized by hnRNPK

Yuanlang Hu, Tao Hao, Hanwen Yu, Wenbin Miao, Yi Zheng, Weihua Tao, Jingshen Zhuang, Jichang Wang, Yujuan Fan, Shiqi Jia

The parenting hub of the hypothalamus is a focus of imprinted gene action

Matthew J. Higgs, Anna E. Webberley, Alasdair J. Allan, Moaz Talat, Rosalind M. John, Anthony R. Isles

Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants

Emilie Aubin, Christel Llauro, Joseph Garrigue, Marie Mirouze, Olivier Panaud, Moaine El Baidouri

Cross-feeding affects the target of resistance evolution to an antifungal drug

Romain Durand, Jordan Jalbert-Ross, Anna Fijarczyk, Alexandre K. Dubé, Christian R. Landry

An allelic series at the EDNRB2 locus controls diverse piebalding patterns in the domestic pigeon

Emily T. Maclary, Ryan Wauer, Bridget Phillips, Audrey Brown, Elena F. Boer, Atoosa M. Samani, Michael D. Shapiro

A protease and a lipoprotein jointly modulate the conserved ExoR-ExoS-ChvI signaling pathway critical in Sinorhizobium meliloti for symbiosis with legume hosts

Julian A. Bustamante, Josue S. Ceron, Ivan Thomas Gao, Hector A. Ramirez, Milo V. Aviles, Demsin Bet Adam, Jason R. Brice, Rodrigo A. Cuellar, Eva Dockery, Miguel Karlo Jabagat, Donna Grace Karp, Joseph Kin-On Lau, Suling Li, Raymondo Lopez-Magaña, Rebecca R. Moore, Bethany Kristi R. Morin, Juliana Nzongo, Yasha Rezaeihaghighi, Joseph Sapienza-Martinez, Tuyet Thi Kim Tran, Zhenzhong Huang, Aaron J. Duthoy, Melanie J. Barnett, Sharon R. Long, Joseph C. Chen

Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation

Phillip Wulfridge, Adam Davidovich, Anna C. Salvador, Gabrielle C. Manno, Rakel Tryggvadottir, Adrian Idrizi, M. Nazmul Huda, Brian J. Bennett, L. Garry Adams, Kasper D. Hansen, David W. Threadgill, Andrew P. Feinberg

Meta-analysis of genome-wide association studies of gestational duration and spontaneous preterm birth identifies new maternal risk loci

Anu Pasanen, Minna K. Karjalainen, FinnGen, Ge Zhang, Heli Tiensuu, Antti M. Haapalainen, Marja Ojaniemi, Bjarke Feenstra, Bo Jacobsson, Aarno Palotie, Hannele Laivuori, Louis J. Muglia, Mika Rämet, Mikko Hallman

The pleiotropic functions of Pri smORF peptides synchronize leg development regulators

Damien Markus, Aurore Pelletier, Muriel Boube, Fillip Port, Michael Boutros, François Payre, Benedikt Obermayer, Jennifer Zanet