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January 2023

A modest increase in the level of hepatic c-Myc provided by an Albumin-c-Myc transgene rescues the neonatal growth defect and significantly improves hepatobiliary disease in mice with hepatic ribosomal protein S6 (Rps6) insufficiency (△S6 mice). While the △S6 mouse (second from left) is runted and has a yellow-tinged coat due to a failure of bile duct development and cholestatic-induced hepatocyte death, the mouse expressing a higher level of c-Myc (△S6:c-Myc mouse) (far right) is indistinguishable from the wild-type (WT) mouse (far-left) or its Albumin-c-Myc littermate (third from left) in terms of size and lacks the jaundiced (yellowed) coat of the △S6 mouse. See Comerford et al. Download January's cover page.

Image Credit: R.E. Hammer and S.A. Comerford

Review

Using epigenomics to understand cellular responses to environmental influences in diseases

Julia J. Wattacheril, Srilakshmi Raj, David A. Knowles, John M. Greally

Research Articles

ESR1 gene amplification and MAP3K mutations are selected during adjuvant endocrine therapies in relapsing Hormone Receptor-positive, HER2-negative breast cancer (HR+ HER2- BC)

Lorenzo Ferrando, Andrea Vingiani, Anna Garuti, Claudio Vernieri, Antonino Belfiore, Luca Agnelli, Gianpaolo Dagrada, Diana Ivanoiu, Giuseppina Bonizzi, Elisabetta Munzone, Luana Lippolis, Martina Dameri, Francesco Ravera, Marco Colleoni, Giuseppe Viale, Luca Magnani, Alberto Ballestrero, Gabriele Zoppoli, Giancarlo Pruneri

Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii

Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer

A role for BCL2L13 and autophagy in germline purifying selection of mtDNA

Laura S. Kremer, Lyuba V. Bozhilova, Diana Rubalcava-Gracia, Roberta Filograna, Mamta Upadhyay, Camilla Koolmeister, Patrick F. Chinnery, Nils-Göran Larsson

Reduced coenzyme Q synthesis confers non-target site resistance to the herbicide thaxtomin A

Chloe Casey, Thomas Köcher, Clément Champion, Katharina Jandrasits, Magdalena Mosiolek, Clémence Bonnot, Liam Dolan

Characterization of the innate immune response to Streptococcus pneumoniae infection in zebrafish

Anni K. Saralahti, Sanna-Kaisa E. Harjula, Tommi Rantapero, Meri I. E. Uusi-Mäkelä, Mikko Kaasinen, Maiju Junno, Hannaleena Piippo, Matti Nykter, Olli Lohi, Samuli Rounioja, Mataleena Parikka, Mika Rämet

Ubiquitination of stalled ribosomes enables mRNA decay via HBS-1 and NONU-1 in vivo

Parissa C. Monem, Nitin Vidyasagar, Audrey L. Piatt, Enisha Sehgal, Joshua A. Arribere

Perturbed fatty-acid metabolism is linked to localized chromatin hyperacetylation, increased stress-response gene expression and resistance to oxidative stress

Jarmila Princová, Clàudia Salat-Canela, Petr Daněk, Anna Marešová, Laura de Cubas, Jürg Bähler, José Ayté, Elena Hidalgo, Martin Převorovský

Atp7b-dependent choroid plexus dysfunction causes transient copper deficit and metabolic changes in the developing mouse brain

Clorissa L. Washington-Hughes, Shubhrajit Roy, Herana Kamal Seneviratne, Senthilkumar S. Karuppagounder, Yulemni Morel, Jace W. Jones, Alex Zak, Tong Xiao, Tatiana N. Boronina, Robert N. Cole, Namandjé N. Bumpus, Christopher J. Chang, Ted M. Dawson, Svetlana Lutsenko

The Prmt5-Vasa module is essential for spermatogenesis in Bombyx mori

Xu Yang, Dongbin Chen, Shirui Zheng, Meiyan Yi, Shanshan Wang, Yongjian Liu, Lianyan Jing, Zulian Liu, Dehong Yang, Yujia Liu, Linmeng Tang, James R. Walters, Yongping Huang

Multi-omic association study identifies DNA methylation-mediated genotype and smoking exposure effects on lung function in children living in urban settings

Matthew Dapas, Emma E. Thompson, William Wentworth-Sheilds, Selene Clay, Cynthia M. Visness, Agustin Calatroni, Joanne E. Sordillo, Diane R. Gold, Robert A. Wood, Melanie Makhija, Gurjit K. Khurana Hershey, Michael G. Sherenian, Rebecca S. Gruchalla, Michelle A. Gill, Andrew H. Liu, Haejin Kim, Meyer Kattan, Leonard B. Bacharier, Deepa Rastogi, Matthew C. Altman, William W. Busse, Patrice M. Becker, Dan Nicolae, George T. O’Connor, James E. Gern, Daniel J. Jackson, Carole Ober

G protein-coupled receptor kinase-2 (GRK-2) controls exploration through neuropeptide signaling in Caenorhabditis elegans

Kristen Davis, Christo Mitchell, Olivia Weissenfels, Jihong Bai, David M. Raizen, Michael Ailion, Irini Topalidou

Fzr regulates silk gland growth by promoting endoreplication and protein synthesis in the silkworm

Wenliang Qian, Hao Li, Xing Zhang, Yaohao Tang, Dongqin Yuan, Zhu Huang, Daojun Cheng

An atypical NLR protein modulates the NRC immune receptor network in Nicotiana benthamiana

Hiroaki Adachi, Toshiyuki Sakai, Adeline Harant, Hsuan Pai, Kodai Honda, AmirAli Toghani, Jules Claeys, Cian Duggan, Tolga O. Bozkurt, Chih-hang Wu, Sophien Kamoun

Historic samples reveal loss of wild genotype through domestic chicken introgression during the Anthropocene

Meng Yue Wu, Giovanni Forcina, Gabriel Weijie Low, Keren R. Sadanandan, Chyi Yin Gwee, Hein van Grouw, Shaoyuan Wu, Scott V. Edwards, Maude W. Baldwin, Frank E. Rheindt

Altered energy metabolism in Fatal Familial Insomnia cerebral organoids is associated with astrogliosis and neuronal dysfunction

Simote T. Foliaki, Anna Smith, Benjamin Schwarz, Eric Bohrnsen, Catharine M. Bosio, Katie Williams, Christina D. Orrú, Hailey Lachenauer, Bradley R. Groveman, Cathryn L. Haigh

Gene burden analysis identifies genes associated with increased risk and severity of adult-onset hearing loss in a diverse hospital-based cohort

Daniel Hui, Shadi Mehrabi, Alexandra E. Quimby, Tingfang Chen, Sixing Chen, Joseph Park, Binglan Li, Regeneron Genetics Center, Penn Medicine Biobank, Michael J. Ruckenstein, Daniel J. Rader, Marylyn D. Ritchie, Jason A. Brant, Douglas J. Epstein, Iain Mathieson

Sequencing-based fine-mapping and in silico functional characterization of the 10q24.32 arsenic metabolism efficiency locus across multiple arsenic-exposed populations

Meytal Batya Chernoff, Dayana Delgado, Lin Tong, Lin Chen, Meritxell Oliva, Lizeth I. Tamayo, Lyle G. Best, Shelley Cole, Farzana Jasmine, Muhammad G. Kibriya, Heather Nelson, Lei Huang, Karin Haack, Jack Kent, Jason G. Umans, Joseph Graziano, Ana Navas-Acien, Margaret R. Karagas, Habib Ahsan, Brandon L. Pierce

The Osiris family genes function as novel regulators of the tube maturation process in the Drosophila trachea

Aaron Scholl, Istri Ndoja, Niraj Dhakal, Doria Morante, Abigail Ivan, Darren Newman, Thomas Mossington, Christian Clemans, Sruthi Surapaneni, Michael Powers, Lan Jiang

Decomposing heritability and genetic covariance by direct and indirect effect paths

Jie Song, Yiqing Zou, Yuchang Wu, Jiacheng Miao, Ze Yu, Jason M. Fletcher, Qiongshi Lu

The evolution of ovary-biased gene expression in Hawaiian Drosophila

Samuel H. Church, Catriona Munro, Casey W. Dunn, Cassandra G. Extavour

Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs

Frode Lingaas, Katarina Tengvall, Johan Høgset Jansen, Lena Pelander, Maria H. Hurst, Theo Meuwissen, Åsa Karlsson, Jennifer R. S. Meadows, Elisabeth Sundström, Stein Istre Thoresen, Ellen Frøysadal Arnet, Ole Albert Guttersrud, Marcin Kierczak, Marjo K. Hytönen, Hannes Lohi, Åke Hedhammar, Kerstin Lindblad-Toh, Chao Wang

Mitochondrial remodelling is essential for female germ cell differentiation and survival

Vernon Leander Monteiro, Darya Safavian, Deepika Vasudevan, Thomas Ryan Hurd

Shuffling the yeast genome using CRISPR/Cas9-generated DSBs that target the transposable Ty1 elements

Lei Qi, Yang Sui, Xing-Xing Tang, Ryan J. McGinty, Xiao-Zhuan Liang, Margaret Dominska, Ke Zhang, Sergei M. Mirkin, Dao-Qiong Zheng, Thomas D. Petes

Conformational rearrangements in the sensory RcsF/OMP complex mediate signal transduction across the bacterial cell envelope

Sarah R. Lach, Santosh Kumar, Seonghoon Kim, Wonpil Im, Anna Konovalova

Filamin C is Essential for mammalian myocardial integrity

Tongbin Wu, Yujun Xu, Lunfeng Zhang, Zhengyu Liang, Xiaohai Zhou, Sylvia M. Evans, Ju Chen

Genomic instability caused by Arp2/3 complex inactivation results in micronucleus biogenesis and cellular senescence

Elena L. Haarer, Corey J. Theodore, Shirley Guo, Ryan B. Frier, Kenneth G. Campellone

Chromatin landscape, DSB levels, and cKU-70/80 contribute to patterning of meiotic DSB processing along chromosomes in C. elegans

Laura I. Lascarez-Lagunas, Marina Martinez-Garcia, Saravanapriah Nadarajan, Brianna N. Diaz-Pacheco, Elizaveta Berson, Mónica P. Colaiácovo