Gene network analysis predicts the primary regulators of ABA-dependent transcriptional activation and repression in Populus roots

David Cohen; Maira De Freitas Pereira; Iva Pavlović; Ondrej Novák; Marie-Béatrice Bogeat-Triboulot; Sarah Jane Cookson; Irène Hummel

doi:10.1371/journal.pgen.1012256

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Open Access

Peer-reviewed

Research Article

Gene network analysis predicts the primary regulators of ABA-dependent transcriptional activation and repression in Populus roots

David Cohen ,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Project administration, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: david.cohen@inrae.fr

Affiliation AgroParisTech, INRAE, UMR Silva, Université de Lorraine, Nancy, France

https://orcid.org/0000-0002-0320-8865

⨯
Maira De Freitas Pereira,

Roles Formal analysis, Investigation, Writing – review & editing

Affiliation AgroParisTech, INRAE, UMR Silva, Université de Lorraine, Nancy, France
⨯
Iva Pavlović,

Roles Formal analysis, Investigation, Writing – review & editing

Affiliation Laboratory of Growth Regulators, Faculty of Science of Palacký University & Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic
⨯
Ondrej Novák,

Roles Formal analysis, Funding acquisition, Investigation, Writing – review & editing

Affiliation Laboratory of Growth Regulators, Faculty of Science of Palacký University & Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic

https://orcid.org/0000-0003-3452-0154

⨯
Marie-Béatrice Bogeat-Triboulot,

Roles Conceptualization, Investigation, Writing – review & editing

Affiliation AgroParisTech, INRAE, UMR Silva, Université de Lorraine, Nancy, France

https://orcid.org/0000-0003-3015-488X

⨯
Sarah Jane Cookson,

Roles Writing – original draft, Writing – review & editing

Affiliation EGFV, Université Bordeaux, Bordeaux Sciences Agro, INRAE, ISVV, Villenave d’Ornon, France
⨯
Irène Hummel

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation AgroParisTech, INRAE, UMR Silva, Université de Lorraine, Nancy, France

https://orcid.org/0009-0009-7600-233X

⨯

Gene network analysis predicts the primary regulators of ABA-dependent transcriptional activation and repression in Populus roots

David Cohen,
Maira De Freitas Pereira,
Iva Pavlović,
Ondrej Novák,
Marie-Béatrice Bogeat-Triboulot,
Sarah Jane Cookson,
Irène Hummel

Published: August 4, 2026
https://doi.org/10.1371/journal.pgen.1012256

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Arabidopsis thaliana
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