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Bayesian network imputation methods applied to multi-omics data identify putative causal relationships in a type 2 diabetes dataset containing incomplete data: An IMI DIRECT Study
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Richard Howey,
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing
Affiliations Research Software Engineering, Newcastle University, Newcastle upon Tyne, United Kingdom, Population Health Sciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom
⨯ - Jonathan Adam,
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Jerzy Adamski,
Roles Resources, Writing – review & editing
Affiliations Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore, Institute of Experimental Genetics, German Research Center for Environmental Health, Helmholtz Zentrum München, München, Germany, Institute of Biochemistry, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
⨯ - Natalie N. Atabaki,
- Søren Brunak,
- Piotr Jaroslaw Chmura,
- Federico De Masi,
- Emmanouil T. Dermitzakis,
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Juan J. Fernandez-Tajes,
Roles Resources, Writing – review & editing
Affiliation Wellcome Centre for Human Genetics, University of Oxford, Oxford, United Kingdom
⨯ -
Ian M. Forgie,
Roles Resources, Writing – review & editing
Affiliation Diabetes Endocrinology and Reproductive Biology, Ninewells Hospital and Medical School, University of Dundee, Dundee, United Kingdom
⨯ -
Paul W. Franks,
Roles Resources, Writing – review & editing
Affiliations Department of Clinical Science, Genetic and Molecular Epidemiology, Lund University Diabetes Centre, Lund, Sweden, Precision Healthcare University Research Institute, Queen Mary University of London, London, United Kingdom
⨯ - Giuseppe N. Giordano,
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Mark Haid,
Roles Resources, Writing – review & editing
Affiliation Metabolomics and Proteomics Core, German Research Center for Environmental Health, Helmholtz Zentrum München, München, Germany
⨯ - Torben Hansen,
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Tue H. Hansen,
Roles Resources, Writing – review & editing
Affiliations Department of Clinical Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark, Medical Department, Zealand University Hospital, Køge, Denmark
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Peter P. Harms,
Roles Resources, Writing – review & editing
Affiliation Department of General Practice Medicine, Amsterdam UMC, Amsterdam, The Netherlands
⨯ - Andrew T. Hattersley,
- Mun-gwan Hong,
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Ulrik Plesner Jacobsen,
Roles Resources, Writing – review & editing
Affiliation Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
⨯ - Angus G. Jones,
- Robert W. Koivula,
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Tarja Kokkola,
Roles Resources, Writing – review & editing
Affiliation Internal Medicine, Institute of Clinical Medicine, University of Eastern Finland, Kuopio, Finland
⨯ - Anubha Mahajan,
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Andrea Mari,
Roles Data curation, Resources, Writing – review & editing
Affiliation Institute of Neuroscience, National Research Council, Rome, Italy
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Mark I. McCarthy,
Roles Resources, Writing – review & editing
Current address: Genentech, South San Francisco, California, United States of America
Affiliation Wellcome Centre for Human Genetics, University of Oxford, Oxford, United Kingdom
⨯ - Timothy J. McDonald,
- Petra B. Musholt,
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Imre Pavo,
Roles Resources, Writing – review & editing
Affiliation Eli Lilly Regional Operations GmbH, Wien, Austria
⨯ - Ewan R. Pearson,
- Oluf Pedersen,
- Hartmut Ruetten,
- Femke Rutters,
- Jochen M. Schwenk,
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Sapna Sharma,
Roles Resources, Writing – review & editing
Affiliation Research Unit of Molecular Epidemiology, Institute of Epidemiology, German Research Center for Environmental Health, Helmholtz Zentrum München, München, Germany
⨯ - Leen M. ’t Hart,
- Henrik Vestergaard,
- Mark Walker,
- The IMI DIRECT Consortium ,
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Ana Viñuela,
Roles Conceptualization, Supervision, Writing – original draft, Writing – review & editing
Affiliations Biosciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom, Population Health and Genomics, Ninewells Hospital and Medical School, University of Dundee, Dundee, United Kingdom
⨯ - [ ... ],
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Heather J. Cordell
Roles Conceptualization, Funding acquisition, Methodology, Supervision, Writing – original draft, Writing – review & editing
* E-mail: heather.cordell@newcastle.ac.uk
Affiliation Population Health Sciences Institute, Faculty of Medical Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom
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https://orcid.org/0009-0003-2382-4942
Bayesian network imputation methods applied to multi-omics data identify putative causal relationships in a type 2 diabetes dataset containing incomplete data: An IMI DIRECT Study
- Richard Howey,
- Jonathan Adam,
- Jerzy Adamski,
- Natalie N. Atabaki,
- Søren Brunak,
- Piotr Jaroslaw Chmura,
- Federico De Masi,
- Emmanouil T. Dermitzakis,
- Juan J. Fernandez-Tajes,
- Ian M. Forgie
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- Published: July 15, 2025
- https://doi.org/10.1371/journal.pgen.1011776