Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites

• José Manuel Villalobos-Escobedo ,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: jose.villalobos@berkeley.edu (JMVE); lglass@berkeley.edu (NLG)

  Affiliations Plant and Microbial Biology Department, The University of California, Berkeley, California, United States of America, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0000-0002-8412-6748

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• Maria Belen Mercado-Esquivias,

  Roles Formal analysis, Investigation, Methodology

  Affiliations Plant and Microbial Biology Department, The University of California, Berkeley, California, United States of America, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0009-0007-8916-689X

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• Catharine Adams,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliations Plant and Microbial Biology Department, The University of California, Berkeley, California, United States of America, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0000-0002-0914-0806

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• W. Berkeley Kauffman,

  Roles Investigation, Resources

  Affiliation U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0000-0003-0571-5403

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• Rex R. Malmstrom,

  Roles Resources, Supervision, Writing – review & editing

  Affiliations Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0000-0002-4758-7369

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• Adam M. Deutschbauer,

  Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Supervision, Validation, Writing – review & editing

  Affiliations Plant and Microbial Biology Department, The University of California, Berkeley, California, United States of America, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0000-0003-2728-7622

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• N. Louise Glass

  Roles Conceptualization, Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing

  * E-mail: jose.villalobos@berkeley.edu (JMVE); lglass@berkeley.edu (NLG)

  Affiliations Plant and Microbial Biology Department, The University of California, Berkeley, California, United States of America, Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0000-0002-4844-2890

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