Prioritized candidate causal haplotype blocks in plant genome-wide association studies

Xing Wu; Wei Jiang; Christopher Fragoso; Jing Huang; Geyu Zhou; Hongyu Zhao; Stephen Dellaporta

doi:10.1371/journal.pgen.1010437

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Open Access

Peer-reviewed

Research Article

Prioritized candidate causal haplotype blocks in plant genome-wide association studies

Xing Wu ,

Contributed equally to this work with: Xing Wu, Wei Jiang

Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America
⨯
Wei Jiang ,

Contributed equally to this work with: Xing Wu, Wei Jiang

Roles Conceptualization, Formal analysis, Methodology, Software, Writing – review & editing

Affiliation Department of Biostatistics, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America

https://orcid.org/0000-0001-6120-5278

⨯
Christopher Fragoso,

Roles Conceptualization, Methodology, Visualization, Writing – review & editing

Affiliation Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America

https://orcid.org/0000-0001-5330-2588

⨯
Jing Huang,

Roles Conceptualization, Data curation, Writing – review & editing

Affiliation Department of Applied Biological Science, Zhejiang University, Hangzhou, Zhejiang, China
⨯
Geyu Zhou,

Roles Conceptualization, Methodology, Writing – review & editing

Affiliation Program of Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America
⨯
Hongyu Zhao,

Roles Conceptualization, Methodology, Supervision, Writing – review & editing

Affiliations Department of Biostatistics, Yale School of Public Health, Yale University, New Haven, Connecticut, United States of America, Program of Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

https://orcid.org/0000-0003-1195-9607

⨯
Stephen Dellaporta

Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

* E-mail: stephen.dellaporta@yale.edu

Affiliation Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America

https://orcid.org/0000-0001-7452-3291

⨯

Prioritized candidate causal haplotype blocks in plant genome-wide association studies

Xing Wu,
Wei Jiang,
Christopher Fragoso,
Jing Huang,
Geyu Zhou,
Hongyu Zhao,
Stephen Dellaporta

Published: October 17, 2022
https://doi.org/10.1371/journal.pgen.1010437

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Genome-wide association studies
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Haplotypes
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Single nucleotide polymorphisms
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Arabidopsis thaliana
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Genetic loci
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Simulation and modeling
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Clustering algorithms
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Genome annotation
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