Genomic features underlie the co-option of SVA transposons as cis-regulatory elements in human pluripotent stem cells

• Samantha M. Barnada ,

  Roles Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  ¶‡ These authors share first authorship on this work.

  Affiliations Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America, Genetics, Genomics and Cancer Biology PhD Program, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0003-4316-4008

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• Andrew Isopi ,

  Roles Data curation, Formal analysis, Investigation, Writing – original draft

  ¶‡ These authors share first authorship on this work.

  Affiliations Department of Microbiology and Immunology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America, Biochemistry and Molecular Pharmacology PhD Program, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0001-6086-3439

  ⨯
• Daniela Tejada-Martinez,

  Roles Data curation, Writing – review & editing

  Affiliation Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

  ⨯
• Clément Goubert,

  Roles Data curation, Formal analysis, Writing – review & editing

  Affiliation Department of Human Genetics, McGill University, Montreal, Quebec, Canada

  https://orcid.org/0000-0001-8034-5559

  ⨯
• Sruti Patoori,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0003-1825-2444

  ⨯
• Luca Pagliaroli,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

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• Mason Tracewell,

  Roles Investigation, Writing – review & editing

  Affiliations Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America, Biochemistry and Molecular Pharmacology PhD Program, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0003-2749-3848

  ⨯
• Marco Trizzino

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: marco.trizzino83@gmail.com

  Affiliation Department of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0002-1383-7200

  ⨯