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Open Access
Peer-reviewed
Methods
THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data
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Bryce Rowland,
Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing
Affiliation Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
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Ruth Huh,
Roles Conceptualization, Formal analysis, Methodology
Affiliation Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
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Zoey Hou,
Roles Data curation
Affiliation Department of Engineering Sciences and Applied Mathematics, Northwestern University, Evanston, Illinois, United States of America
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Cheynna Crowley,
Roles Data curation, Software
Affiliation Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
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Jia Wen,
Roles Data curation, Writing – review & editing
Affiliation Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
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Yin Shen,
Roles Conceptualization, Methodology, Writing – review & editing
Affiliations Institute for Human Genetics, University of California San Francisco, San Francisco, California, United States of America, Department of Neurology, University of California San Francisco, San Francisco, California, United States of America
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Ming Hu,
Roles Conceptualization, Methodology, Writing – review & editing
Affiliation Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, Ohio, United States of America
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Paola Giusti-Rodríguez,
Roles Conceptualization, Data curation, Investigation, Writing – review & editing
Affiliation Department of Psychiatry, University of Florida College of Medicine, Gainesville, Florida, United States of America
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Patrick F. Sullivan,
Roles Supervision, Writing – review & editing
Affiliations Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America, Department of Psychiatry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America, Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
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Yun Li
Roles Conceptualization, Data curation, Methodology, Supervision, Writing – review & editing
* E-mail: yun_li@med.unc.edu
Affiliations Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America, Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America, Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
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THUNDER: A reference-free deconvolution method to infer cell type proportions from bulk Hi-C data
- Bryce Rowland,
- Ruth Huh,
- Zoey Hou,
- Cheynna Crowley,
- Jia Wen,
- Yin Shen,
- Ming Hu,
- Paola Giusti-Rodríguez,
- Patrick F. Sullivan,
- Yun Li
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- Published: March 8, 2022
- https://doi.org/10.1371/journal.pgen.1010102
- See the preprint