Gene disruption by structural mutations drives selection in US rice breeding over the last century

• Justin N. Vaughn ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: justin.vaughn@usda.gov (JNV); brian.scheffler@usda.gov (BES)

  Affiliations USDA-ARS, Genomics and Bioinformatics Research Unit, Stoneville, Mississippi, United States of America, University of Georgia, Athens, Institute of Plant Breeding, Genetics, and Genomics, Athens, Georgia, United States of America

  https://orcid.org/0000-0002-5261-5096

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• Walid Korani,

  Roles Formal analysis, Methodology, Software

  Affiliation University of Georgia, Athens, Institute of Plant Breeding, Genetics, and Genomics, Athens, Georgia, United States of America

  https://orcid.org/0000-0001-5372-2240

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• Joshua C. Stein,

  Roles Data curation, Formal analysis, Methodology

  Affiliation Cold Spring Harbor Laboratory, Cold Springs Harbor, New York, United States of America

  https://orcid.org/0000-0003-0028-5563

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• Jeremy D. Edwards,

  Roles Conceptualization, Data curation, Formal analysis, Resources, Writing – review & editing

  Affiliation USDA-ARS, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas, United States of America

  https://orcid.org/0000-0002-0237-0932

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• Daniel G. Peterson,

  Roles Funding acquisition, Writing – review & editing

  Affiliation Mississippi State University, Institute for Genomics, Biocomputing & Biotechnology, Starkville, Mississippi, United States of America

  https://orcid.org/0000-0002-0274-5968

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• Sheron A. Simpson,

  Roles Data curation, Methodology

  Affiliation USDA-ARS, Genomics and Bioinformatics Research Unit, Stoneville, Mississippi, United States of America

  https://orcid.org/0000-0003-0288-3452

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• Ramey C. Youngblood,

  Roles Data curation, Methodology

  Affiliation Mississippi State University, Institute for Genomics, Biocomputing & Biotechnology, Starkville, Mississippi, United States of America

  https://orcid.org/0000-0001-9728-5214

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• Jane Grimwood,

  Roles Data curation, Methodology

  Affiliation Hudson-Alpha Institute for Biotechnology, Huntsville, Alabama, United States of America

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• Kapeel Chougule,

  Roles Formal analysis

  Affiliation Cold Spring Harbor Laboratory, Cold Springs Harbor, New York, United States of America

  https://orcid.org/0000-0002-1967-4246

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• Doreen H. Ware,

  Roles Conceptualization, Resources, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Cold Spring Harbor Laboratory, Cold Springs Harbor, New York, United States of America, USDA-ARS, Robert W. Holley Center for Agriculture and Health, Ithaca, New York, United States of America

  https://orcid.org/0000-0002-8125-3821

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• Anna M. McClung,

  Roles Conceptualization, Resources, Writing – original draft, Writing – review & editing

  Affiliation USDA-ARS, Dale Bumpers National Rice Research Center, Stuttgart, Arkansas, United States of America

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• Brian E. Scheffler

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: justin.vaughn@usda.gov (JNV); brian.scheffler@usda.gov (BES)

  Affiliation USDA-ARS, Genomics and Bioinformatics Research Unit, Stoneville, Mississippi, United States of America

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