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Open Access
Peer-reviewed
Research Article
On the cross-population generalizability of gene expression prediction models
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Kevin L. Keys ,
Roles Conceptualization, Formal analysis, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: klkeys@g.ucla.edu (KLK); chris.gignoux@ucdenver.edu (CRG)
Affiliations Department of Medicine, University of California, San Francisco, California, United States of America, Berkeley Institute for Data Science, University of California, Berkeley, California, United States of America
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Angel C. Y. Mak,
Roles Data curation, Methodology, Project administration, Resources, Software, Visualization, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Marquitta J. White,
Roles Methodology, Visualization, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Walter L. Eckalbar,
Roles Methodology, Software, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Andrew W. Dahl,
Roles Methodology, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Joel Mefford,
Roles Methodology, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Anna V. Mikhaylova,
Roles Methodology, Writing – review & editing
Affiliation Department of Biostatistics, University of Washington, Seattle, Washington, United States of America
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María G. Contreras,
Roles Writing – review & editing
Affiliations Department of Medicine, University of California, San Francisco, California, United States of America, San Francisco State University, San Francisco, California, United States of America
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Jennifer R. Elhawary,
Roles Data curation, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Celeste Eng,
Roles Resources, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Donglei Hu,
Roles Data curation, Resources, Software, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Scott Huntsman,
Roles Data curation, Resources, Software, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Sam S. Oh,
Roles Data curation, Resources, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Sandra Salazar,
Roles Data curation, Project administration, Resources, Writing – review & editing
Affiliation Department of Medicine, University of California, San Francisco, California, United States of America
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Michael A. Lenoir,
Roles Data curation, Resources, Writing – review & editing
Affiliation Bay Area Pediatrics, Oakland, California, United States of America
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Jimmie C. Ye,
Roles Methodology, Writing – review & editing
Affiliations Department of Epidemiology and Biostatistics, University of California, San Francisco, California, United States of America, Department of Bioengineering and Therapeutic Biosciences, University of California, San Francisco, California, United States of America
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Timothy A. Thornton,
Roles Methodology, Supervision, Writing – review & editing
Affiliation Department of Biostatistics, University of Washington, Seattle, Washington, United States of America
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Noah Zaitlen,
Roles Methodology, Writing – review & editing
Affiliation Department of Neurology, University of California, Los Angeles, California, United States of America
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Esteban G. Burchard ,
Roles Funding acquisition, Project administration, Writing – review & editing
¶‡ These authors are joint senior authors on this work.
Affiliations Department of Medicine, University of California, San Francisco, California, United States of America, Department of Bioengineering and Therapeutic Biosciences, University of California, San Francisco, California, United States of America
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Christopher R. Gignoux
Roles Conceptualization, Data curation, Methodology, Project administration, Resources, Software, Supervision, Visualization, Writing – original draft, Writing – review & editing
* E-mail: klkeys@g.ucla.edu (KLK); chris.gignoux@ucdenver.edu (CRG)
¶‡ These authors are joint senior authors on this work.
Affiliations Colorado Center for Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America, Department of Biostatistics and Informatics, School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, Colorado, United States of America
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On the cross-population generalizability of gene expression prediction models
- Kevin L. Keys,
- Angel C. Y. Mak,
- Marquitta J. White,
- Walter L. Eckalbar,
- Andrew W. Dahl,
- Joel Mefford,
- Anna V. Mikhaylova,
- María G. Contreras,
- Jennifer R. Elhawary,
- Celeste Eng
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- Published: August 14, 2020
- https://doi.org/10.1371/journal.pgen.1008927