Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

• Marie Touchon ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: mtouchon@pasteur.fr

  Affiliation Microbial Evolutionary Genomics, Institut Pasteur, CNRS, UMR3525, 25-28 rue Dr Roux, Paris, 75015, France

  http://orcid.org/0000-0001-7389-447X

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• Amandine Perrin,

  Roles Data curation, Resources, Software, Writing – review & editing

  Affiliations Microbial Evolutionary Genomics, Institut Pasteur, CNRS, UMR3525, 25-28 rue Dr Roux, Paris, 75015, France, Sorbonne Université, Collège doctoral, F-75005 Paris, France

  http://orcid.org/0000-0003-4797-6185

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• Jorge André Moura de Sousa,

  Roles Resources, Software, Writing – review & editing

  Affiliation Microbial Evolutionary Genomics, Institut Pasteur, CNRS, UMR3525, 25-28 rue Dr Roux, Paris, 75015, France

  http://orcid.org/0000-0003-3530-8550

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• Belinda Vangchhia,

  Roles Resources, Writing – review & editing

  Affiliations Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia, Department of Veterinary Microbiology, College of Veterinary Sciences & Animal Husbandry, Central Agricultural University, Selesih, Aizawl, Mizoram, India

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• Samantha Burn,

  Roles Resources, Writing – review & editing

  Affiliation Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia

  http://orcid.org/0000-0001-8377-7613

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• Claire L. O’Brien,

  Roles Resources, Writing – review & editing

  Affiliation School of Medicine, University of Wollongong, Northfields Ave Wollongong, Australia

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• Erick Denamur,

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliations Université de Paris, IAME, UMR 1137, INSERM, Paris, 75018, France, AP-HP, Laboratoire de Génétique Moléculaire, Hôpital Bichat, 75018, Paris, France

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• David Gordon,

  Roles Conceptualization, Data curation, Funding acquisition, Resources, Writing – review & editing

  Affiliation Ecology and Evolution, Research School of Biology, The Australian National University, Acton, ACT, Australia

  http://orcid.org/0000-0002-2880-3003

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• Eduardo PC Rocha

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Writing – original draft, Writing – review & editing

  Affiliation Microbial Evolutionary Genomics, Institut Pasteur, CNRS, UMR3525, 25-28 rue Dr Roux, Paris, 75015, France

  http://orcid.org/0000-0001-7704-822X

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