Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago

• Heini M. Natri ,

  Contributed equally to this work with: Heini M. Natri, Katalina S. Bobowik

  Roles Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America, The Translational Genomics Research Institute, Phoenix, Arizona, United States of America

  http://orcid.org/0000-0003-4698-6103

  ⨯
• Katalina S. Bobowik ,

  Contributed equally to this work with: Heini M. Natri, Katalina S. Bobowik

  Roles Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Melbourne Integrative Genomics, University of Melbourne, Parkville, Australia, School of BioSciences, University of Melbourne, Parkville, Australia, Centre for Stem Cell Systems, University of Melbourne, Parkville, Australia

  http://orcid.org/0000-0002-7030-3969

  ⨯
• Pradiptajati Kusuma,

  Roles Data curation, Formal analysis, Methodology, Project administration, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Genome Diversity and Diseases Laboratory, Eijkman Institute for Molecular Biology, Jakarta, Indonesia, Complexity Institute, Nanyang Technological University, Singapore, Singapore

  http://orcid.org/0000-0002-9722-4048

  ⨯
• Chelzie Crenna Darusallam,

  Roles Data curation, Project administration, Writing – review & editing

  Affiliation Genome Diversity and Diseases Laboratory, Eijkman Institute for Molecular Biology, Jakarta, Indonesia

  ⨯
• Guy S. Jacobs,

  Roles Data curation, Project administration, Resources, Writing – review & editing

  Affiliation Complexity Institute, Nanyang Technological University, Singapore, Singapore

  http://orcid.org/0000-0002-4698-7758

  ⨯
• Georgi Hudjashov,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Statistics and Bioinformatics Group, School of Fundamental Sciences, Massey University, Palmerston North, New Zealand

  http://orcid.org/0000-0002-7536-9086

  ⨯
• J. Stephen Lansing,

  Roles Data curation, Funding acquisition, Supervision, Writing – review & editing

  Affiliations Santa Fe Institute, Santa Fe, New Mexico, United States of America, Vienna Complexity Science Hub, Vienna, Austria, Stockholm Resilience Center, Kräftriket, Stockholm, Sweden

  http://orcid.org/0000-0003-2132-5309

  ⨯
• Herawati Sudoyo,

  Roles Conceptualization, Data curation, Project administration, Validation, Writing – review & editing

  Affiliations Genome Diversity and Diseases Laboratory, Eijkman Institute for Molecular Biology, Jakarta, Indonesia, Department of Medical Biology, Faculty of Medicine, University of Indonesia, Jakarta, Indonesia, Sydney Medical School, University of Sydney, Sydney, NSW, Australia

  ⨯
• Nicholas E. Banovich ,

  Roles Conceptualization, Methodology, Project administration, Validation, Writing – original draft, Writing – review & editing

  * E-mail: nbanovich@tgen.org (NEB); m.p.cox@massey.ac.nz (MPC); irene.gallego@unimelb.edu.au (IGR)

  ¶^‡ These authors equally led this work.

  Affiliation The Translational Genomics Research Institute, Phoenix, Arizona, United States of America

  http://orcid.org/0000-0003-2604-3247

  ⨯
• Murray P. Cox ,

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: nbanovich@tgen.org (NEB); m.p.cox@massey.ac.nz (MPC); irene.gallego@unimelb.edu.au (IGR)

  ¶^‡ These authors equally led this work.

  Affiliation Statistics and Bioinformatics Group, School of Fundamental Sciences, Massey University, Palmerston North, New Zealand

  http://orcid.org/0000-0003-1936-0236

  ⨯
• Irene Gallego Romero

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Methodology, Project administration, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: nbanovich@tgen.org (NEB); m.p.cox@massey.ac.nz (MPC); irene.gallego@unimelb.edu.au (IGR)

  ¶^‡ These authors equally led this work.

  Affiliations Melbourne Integrative Genomics, University of Melbourne, Parkville, Australia, School of BioSciences, University of Melbourne, Parkville, Australia, Centre for Stem Cell Systems, University of Melbourne, Parkville, Australia

  http://orcid.org/0000-0003-1613-8998

  ⨯