Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling

• Guy Nir ,

  Contributed equally to this work with: Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G. Ebeling

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – original draft

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-9268-6596

  ⨯
• Irene Farabella ,

  Contributed equally to this work with: Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G. Ebeling

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Writing – original draft

  Affiliation CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain

  ⨯
• Cynthia Pérez Estrada ,

  Contributed equally to this work with: Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G. Ebeling

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – original draft

  Affiliations Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America, Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America, Center for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America

  ⨯
• Carl G. Ebeling ,

  Contributed equally to this work with: Guy Nir, Irene Farabella, Cynthia Pérez Estrada, Carl G. Ebeling

  Roles Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft

  Affiliation Bruker Nano Inc., Salt Lake City, Utah, United States of America

  http://orcid.org/0000-0003-0536-026X

  ⨯
• Brian J. Beliveau,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Validation, Writing – original draft

  Affiliations Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America, Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts, United States of America, Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America, Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America

  http://orcid.org/0000-0003-1314-3118

  ⨯
• Hiroshi M. Sasaki,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Validation, Writing – original draft

  Affiliations Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts, United States of America, Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-9201-8766

  ⨯
• S. Dean Lee,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Validation, Writing – original draft

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-6391-9821

  ⨯
• Son C. Nguyen,

  Roles Conceptualization, Formal analysis, Investigation, Methodology

  Current address: Department of Genetics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0003-2187-1027

  ⨯
• Ruth B. McCole,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Validation, Writing – original draft

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0002-1861-7055

  ⨯
• Shyamtanu Chattoraj,

  Roles Investigation

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-8596-296X

  ⨯
• Jelena Erceg,

  Roles Resources

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  ⨯
• Jumana AlHaj Abed,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-5388-1751

  ⨯
• Nuno M. C. Martins,

  Roles Resources

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0003-3953-9313

  ⨯
• Huy Q. Nguyen,

  Roles Resources

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0003-4675-0520

  ⨯
• Mohammed A. Hannan,

  Roles Investigation

  Affiliation Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-9603-6283

  ⨯
• Sheikh Russell,

  Roles Investigation

  Affiliation Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America

  http://orcid.org/0000-0003-2998-7817

  ⨯
• Neva C. Durand,

  Roles Investigation

  Affiliations Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts, United States of America

  ⨯
• Suhas S. P. Rao,

  Roles Formal analysis

  Affiliations Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America, Center for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America, Department of Structural Biology, Stanford University School of Medicine, Stanford, California, United States of America

  ⨯
• Jocelyn Y. Kishi,

  Roles Formal analysis

  Affiliations Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts, United States of America, Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0003-4352-1159

  ⨯
• Paula Soler-Vila,

  Roles Formal analysis

  Affiliation CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain

  http://orcid.org/0000-0003-1741-6670

  ⨯
• Michele Di Pierro,

  Roles Validation

  Affiliation Center for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America

  ⨯
• José N. Onuchic,

  Roles Validation

  Affiliation Center for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America

  http://orcid.org/0000-0002-9448-0388

  ⨯
• Steven P. Callahan,

  Roles Data curation, Software, Visualization

  Affiliation Zero Epsilon, LLC, Salt Lake City, Utah, United States of America

  ⨯
• John M. Schreiner,

  Roles Data curation, Software, Visualization

  Affiliation Zero Epsilon, LLC, Salt Lake City, Utah, United States of America

  http://orcid.org/0000-0003-2829-4402

  ⨯
• Jeff A. Stuckey ,

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  * E-mail: Jeff.Stuckey@bruker.com (JAS); Peng_Yin@hms.harvard.edu (PY); erez@erez.com (ELA); martirenom@cnag.crg.eu (MAMR); twu@genetics.med.harvard.edu (CtW)

  Affiliation Bruker Nano Inc., Middleton, Wisconsin, United States of America

  http://orcid.org/0000-0002-2130-9387

  ⨯
• Peng Yin ,

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  * E-mail: Jeff.Stuckey@bruker.com (JAS); Peng_Yin@hms.harvard.edu (PY); erez@erez.com (ELA); martirenom@cnag.crg.eu (MAMR); twu@genetics.med.harvard.edu (CtW)

  Affiliations Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts, United States of America, Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0002-4773-359X

  ⨯
• Erez Lieberman Aiden ,

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  * E-mail: Jeff.Stuckey@bruker.com (JAS); Peng_Yin@hms.harvard.edu (PY); erez@erez.com (ELA); martirenom@cnag.crg.eu (MAMR); twu@genetics.med.harvard.edu (CtW)

  Affiliations Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America, Center for Theoretical Biological Physics, Rice University, Houston, Texas, United States of America, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts, United States of America, Departments of Computer Science and Computational and Applied Mathematics, Rice University, Houston, Texas, United States of America

  ⨯
• Marc A. Marti-Renom ,

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  * E-mail: Jeff.Stuckey@bruker.com (JAS); Peng_Yin@hms.harvard.edu (PY); erez@erez.com (ELA); martirenom@cnag.crg.eu (MAMR); twu@genetics.med.harvard.edu (CtW)

  Affiliations CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain, Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), Barcelona, Spain, Universitat Pompeu Fabra (UPF), Barcelona, Spain, ICREA, Barcelona, Spain

  http://orcid.org/0000-0002-0151-4279

  ⨯
•  [ ... ],
• C.-ting Wu

  Roles Funding acquisition, Project administration, Supervision, Writing – review & editing

  * E-mail: Jeff.Stuckey@bruker.com (JAS); Peng_Yin@hms.harvard.edu (PY); erez@erez.com (ELA); martirenom@cnag.crg.eu (MAMR); twu@genetics.med.harvard.edu (CtW)

  Affiliations Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America, Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts, United States of America

  http://orcid.org/0000-0001-5525-871X

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