A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events

Magali Jaillard; Leandro Lima; Maud Tournoud; Pierre Mahé; Alex van Belkum; Vincent Lacroix; Laurent Jacob

doi:10.1371/journal.pgen.1007758

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Open Access

Peer-reviewed

Research Article

A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events

Magali Jaillard ,

Contributed equally to this work with: Magali Jaillard, Leandro Lima

Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: magali.dancette@biomerieux.com

Affiliations bioMérieux, Marcy l’Étoile, France, Univ Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR5558 F-69622 Villeurbanne, France

http://orcid.org/0000-0001-7010-1921

⨯
Leandro Lima ,

Contributed equally to this work with: Magali Jaillard, Leandro Lima

Roles Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliations Univ Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR5558 F-69622 Villeurbanne, France, EPI ERABLE - Inria Grenoble, Rhône-Alpes, France

http://orcid.org/0000-0001-8976-2762

⨯
Maud Tournoud,

Roles Conceptualization, Supervision, Writing – review & editing

Affiliation bioMérieux, Marcy l’Étoile, France

http://orcid.org/0000-0003-2459-9831

⨯
Pierre Mahé,

Roles Data curation, Formal analysis, Project administration, Writing – review & editing

Affiliation bioMérieux, Marcy l’Étoile, France
⨯
Alex van Belkum,

Roles Validation, Writing – original draft, Writing – review & editing

Affiliation bioMérieux, Marcy l’Étoile, France
⨯
Vincent Lacroix,

Roles Conceptualization, Writing – review & editing

Affiliations Univ Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR5558 F-69622 Villeurbanne, France, EPI ERABLE - Inria Grenoble, Rhône-Alpes, France
⨯
Laurent Jacob

Roles Conceptualization, Formal analysis, Investigation, Methodology, Project administration, Software, Supervision, Writing – original draft, Writing – review & editing

Affiliation Univ Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Evolutive UMR5558 F-69622 Villeurbanne, France

http://orcid.org/0000-0002-7826-2719

⨯

A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events

Magali Jaillard,
Leandro Lima,
Maud Tournoud,
Pierre Mahé,
Alex van Belkum,
Vincent Lacroix,
Laurent Jacob

Published: November 12, 2018
https://doi.org/10.1371/journal.pgen.1007758

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Genomics
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Antibiotic resistance
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