Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae

• David J. Winter,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Statistics and Bioinformatics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand, The Bio-Protection Research Centre, Massey University, Palmerston North, New Zealand

  http://orcid.org/0000-0002-6165-0029

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• Austen R. D. Ganley,

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Writing – original draft, Writing – review & editing

  Affiliation School of Biological Sciences, University of Auckland, Auckland, New Zealand

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• Carolyn A. Young,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Noble Research Institute, LLC, Ardmore, Oklahoma, United States of America

  http://orcid.org/0000-0003-0406-8398

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• Ivan Liachko,

  Roles Data curation, Formal analysis, Investigation, Resources, Writing – original draft, Writing – review & editing

  Affiliation Phase Genomics Inc, Seattle, Washington, United States of America

  http://orcid.org/0000-0001-6972-6705

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• Christopher L. Schardl,

  Roles Conceptualization, Data curation, Writing – review & editing

  Affiliation Department of Plant Pathology, University of Kentucky, Lexington, Kentucky, United States of America

  http://orcid.org/0000-0003-2197-0842

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• Pierre-Yves Dupont,

  Roles Conceptualization, Data curation, Formal analysis, Resources, Writing – review & editing

  Affiliation Genetics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand

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• Daniel Berry,

  Roles Formal analysis, Investigation, Writing – original draft, Writing – review & editing

  Affiliation Genetics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand

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• Arvina Ram,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Genetics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand

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• Barry Scott,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Writing – original draft, Writing – review & editing

  Affiliations The Bio-Protection Research Centre, Massey University, Palmerston North, New Zealand, Genetics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand

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• Murray P. Cox

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: m.p.cox@massey.ac.nz

  Affiliations Statistics and Bioinformatics Group, Institute of Fundamental Sciences, Massey University, Palmerston North, New Zealand, The Bio-Protection Research Centre, Massey University, Palmerston North, New Zealand

  http://orcid.org/0000-0003-1936-0236

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