Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

• Marcin J. Skwark ,

  Contributed equally to this work with: Marcin J. Skwark, Nicholas J. Croucher

  Affiliation Department of Chemistry, Vanderbilt University, Nashville, TN, United States of America

  http://orcid.org/0000-0002-2022-6766

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• Nicholas J. Croucher ,

  Contributed equally to this work with: Marcin J. Skwark, Nicholas J. Croucher

  Affiliation Department of Infectious Disease Epidemiology, Imperial College London, London, United Kingdom

  http://orcid.org/0000-0001-6303-8768

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• Santeri Puranen,

  Affiliation Department of Computer Science, Aalto University, Espoo, Finland

  http://orcid.org/0000-0001-6388-7110

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• Claire Chewapreecha,

  Affiliation Department of Medicine, University of Cambridge, Cambridge, United Kingdom

  http://orcid.org/0000-0002-1313-4011

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• Maiju Pesonen,

  Affiliation Department of Computer Science, Aalto University, Espoo, Finland

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• Ying Ying Xu,

  Affiliation Department of Computer Science, Aalto University, Espoo, Finland

  http://orcid.org/0000-0002-9096-0552

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• Paul Turner,

  Affiliations Shoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Thailand, Centre for Tropical Medicine, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

  http://orcid.org/0000-0002-1013-7815

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• Simon R. Harris,

  Affiliation Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom

  http://orcid.org/0000-0003-1512-6194

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• Stephen B. Beres,

  Affiliation Center for Molecular and Translational Human Infectious Diseases Research, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute, and Houston Methodist Hospital, Houston, Texas, United States of America

  http://orcid.org/0000-0003-3041-0185

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• James M. Musser,

  Affiliations Center for Molecular and Translational Human Infectious Diseases Research, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute, and Houston Methodist Hospital, Houston, Texas, United States of America, Departments of Pathology and Laboratory Medicine and Microbiology and Immunology, Weill Cornell Medical College, New York, New York, United States of America

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• Julian Parkhill,

  Affiliation Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom

  http://orcid.org/0000-0002-7069-5958

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• Stephen D. Bentley,

  Affiliation Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom

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• Erik Aurell ,

  * E-mail: jukka.corander@medisin.uio.no (JC); eaurell@kth.se (EA)

  Affiliations Department of Computational Biology, KTH–Royal Institute of Technology, Stockholm, Sweden, Departments of Applied Physics and Computer Science, Aalto University, Espoo, Finland, Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing, China

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• Jukka Corander

  * E-mail: jukka.corander@medisin.uio.no (JC); eaurell@kth.se (EA)

  Affiliations Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge, United Kingdom, Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland, Department of Biostatistics, University of Oslo, Oslo, Norway, Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom

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