Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations

• Alan McNally ,

  * E-mail: a.mcnally@birmingham.ac.uk

  Affiliations Pathogen Research Group, Nottingham Trent University, Nottingham, United Kingdom, Institute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom

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• Yaara Oren,

  Affiliation Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel

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• Darren Kelly,

  Affiliation Department of Biology, National University Ireland, Maynooth, Ireland

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• Ben Pascoe,

  Affiliation College of Medicine, University of Swansea, Swansea, United Kingdom

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• Steven Dunn,

  Affiliation Pathogen Research Group, Nottingham Trent University, Nottingham, United Kingdom

  http://orcid.org/0000-0003-1529-6900

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• Tristan Sreecharan,

  Affiliation Pathogen Research Group, Nottingham Trent University, Nottingham, United Kingdom

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• Minna Vehkala,

  Affiliation Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland

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• Niko Välimäki,

  Affiliation Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland

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• Michael B. Prentice,

  Affiliation Departments of Pathology and Microbiology, University College Cork, Cork, Ireland

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• Amgad Ashour,

  Affiliation Departments of Pathology and Microbiology, University College Cork, Cork, Ireland

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• Oren Avram,

  Affiliation Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel

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• Tal Pupko,

  Affiliation Department of Cell Research and Immunology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, Israel

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• Ulrich Dobrindt,

  Affiliation Institute of Hygiene, Universitat Muenster, Muenster, Germany

  http://orcid.org/0000-0001-9949-1898

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• Ivan Literak,

  Affiliation Department of Biology and Wildlife Diseases, Faculty of Veterinary Hygiene and Ecology, and CEITEC VFU, University of Veterinary and Pharmaceutical Sciences, Brno, Czech Republic

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• Sebastian Guenther,

  Affiliation Centre for Infection Medicine, Institute of Microbiology and Epizootics, Freie Universitat, Berlin, Germany

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• Katharina Schaufler,

  Affiliation Centre for Infection Medicine, Institute of Microbiology and Epizootics, Freie Universitat, Berlin, Germany

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• Lothar H. Wieler,

  Affiliations Centre for Infection Medicine, Institute of Microbiology and Epizootics, Freie Universitat, Berlin, Germany, Robert Koch Institute, Berlin, Germany

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• Zong Zhiyong,

  Affiliation Centre for Infectious Diseases, West China Hospital of Sichuan University, Chengdu, China

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• Samuel K. Sheppard,

  Affiliation College of Medicine, University of Swansea, Swansea, United Kingdom

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• James O. McInerney,

  Affiliations Department of Biology, National University Ireland, Maynooth, Ireland, Faculty of Life Sciences, The University of Manchester, Manchester, United Kingdom

  http://orcid.org/0000-0003-1885-2503

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•  [ ... ],
• Jukka Corander

  Affiliations Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland, Department of Biostatistics, University of Oslo, Oslo, Norway

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