Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines

• Jennifer Spindel,

  Affiliation Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America

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• Hasina Begum,

  Affiliation International Rice Research Institute, Los Baños, Philippines

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• Deniz Akdemir,

  Affiliation Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America

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• Parminder Virk,

  Affiliation International Center for Tropical Agriculture, Cali, Colombia

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• Bertrand Collard,

  Affiliation International Rice Research Institute, Los Baños, Philippines

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• Edilberto Redoña,

  Current address: Delta Research and Extension Center, Stoneville, Mississippi, United States of America

  Affiliation International Rice Research Institute, Los Baños, Philippines

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• Gary Atlin,

  Affiliation Bill & Melinda Gates Foundation, Seattle, Washington, United States of America

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• Jean-Luc Jannink ,

  * E-mail: jj332@cornell.edu (JLJ); srm4@cornell.edu (SRM)

  Affiliations Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America, US Department of Agriculture—Agricultural Research Service (USDA-ARS), Ithaca, New York, United States of America

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• Susan R. McCouch

  * E-mail: jj332@cornell.edu (JLJ); srm4@cornell.edu (SRM)

  Affiliation Department of Plant Breeding and Genetics, Cornell University, Ithaca, New York, United States of America

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