Chromatin Landscapes of Retroviral and Transposon Integration Profiles

Johann de Jong; Waseem Akhtar; Jitendra Badhai; Alistair G. Rust; Roland Rad; John Hilkens; Anton Berns; Maarten van Lohuizen; Lodewyk F. A. Wessels; Jeroen de Ridder

doi:10.1371/journal.pgen.1004250

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Open Access

Peer-reviewed

Research Article

Chromatin Landscapes of Retroviral and Transposon Integration Profiles

Johann de Jong ,

Contributed equally to this work with: Johann de Jong, Waseem Akhtar

Affiliations Computational Cancer Biology Group, Division of Molecular Carcinogenesis, The Netherlands Cancer Institute, Amsterdam, The Netherlands, Netherlands Consortium for Systems Biology, Amsterdam, The Netherlands
⨯
Waseem Akhtar ,

Contributed equally to this work with: Johann de Jong, Waseem Akhtar

Affiliations Netherlands Consortium for Systems Biology, Amsterdam, The Netherlands, Division of Molecular Genetics, The Netherlands Cancer Institute, Amsterdam, The Netherlands
⨯
Jitendra Badhai,

Affiliation Division of Molecular Genetics, The Netherlands Cancer Institute, Amsterdam, The Netherlands
⨯
Alistair G. Rust,

Affiliation Wellcome Trust Sanger Institute, Genome Campus, Hinxton-Cambridge, United Kingdom
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Roland Rad,

Affiliation Department of Medicine II; Klinikum Rechts der Isar; Technische Universität München, German Cancer Research Center (DKFZ), Heidelberg, & German Cancer Consortium (DKTK), Heidelberg, Germany
⨯
John Hilkens,

Affiliation Division of Molecular Genetics, The Netherlands Cancer Institute, Amsterdam, The Netherlands
⨯
Anton Berns,

Affiliations Division of Molecular Genetics, The Netherlands Cancer Institute, Amsterdam, The Netherlands, Skoltech Center for Stem Cell Research, Skolkovo Institute for Science and Technology, Skolkovo, Odintsovsky, Moscow, Russia
⨯
Maarten van Lohuizen,

Affiliations Netherlands Consortium for Systems Biology, Amsterdam, The Netherlands, Division of Molecular Genetics, The Netherlands Cancer Institute, Amsterdam, The Netherlands
⨯
Lodewyk F. A. Wessels ,

* E-mail: l.wessels@nki.nl (LFAW); j.deridder@tudelft.nl (JdR)

Affiliations Computational Cancer Biology Group, Division of Molecular Carcinogenesis, The Netherlands Cancer Institute, Amsterdam, The Netherlands, Netherlands Consortium for Systems Biology, Amsterdam, The Netherlands, Delft Bioinformatics Lab, Faculty of EEMCS, TU Delft, Delft, The Netherlands
⨯
Jeroen de Ridder

* E-mail: l.wessels@nki.nl (LFAW); j.deridder@tudelft.nl (JdR)

Affiliation Delft Bioinformatics Lab, Faculty of EEMCS, TU Delft, Delft, The Netherlands
⨯

Chromatin Landscapes of Retroviral and Transposon Integration Profiles

Johann de Jong,
Waseem Akhtar,
Jitendra Badhai,
Alistair G. Rust,
Roland Rad,
John Hilkens,
Anton Berns,
Maarten van Lohuizen,
Lodewyk F. A. Wessels,
Jeroen de Ridder

Published: April 10, 2014
https://doi.org/10.1371/journal.pgen.1004250

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Mammalian genomics
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DNA methylation
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Cancers and neoplasms
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Site selection
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Transposable elements
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Chromatin
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Gene expression
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Sequence alignment
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