Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication

• Li-Jun Ma ,

  * E-mail: lijun@broad.mit.edu (LJM); wickes@uthscsa.edu (BLW)

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Ashraf S. Ibrahim,

  Affiliation Los Angeles Biomedical Research Institute, Harbor-UCLA Medical Center, Torrance, California, United States of America

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• Christopher Skory,

  Affiliation Bioproducts and Biocatalysis Research, National Center for Agricultural Utilization Research, USDA-ARS, Midwest Area, Peoria, Illinois, United States of America

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• Manfred G. Grabherr,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Gertraud Burger,

  Affiliation Department of Biochemistry, Université de Montréal, Montreal, Canada

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• Margi Butler,

  Affiliation Department of Biochemistry, University of Otago, Otago, New Zealand

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• Marek Elias,

  Affiliation Department of Botany, Faculty of Science, Charles University, Prague, Czech Republic

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• Alexander Idnurm,

  Affiliation Division of Cell Biology and Biophysics, School of Biological Sciences, University of Missouri, Kansas City, Missouri, United States of America

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• B. Franz Lang,

  Affiliation Department of Biochemistry, Université de Montréal, Montreal, Canada

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• Teruo Sone,

  Affiliation Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan

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• Ayumi Abe,

  Affiliation Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan

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• Sarah E. Calvo,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Luis M. Corrochano,

  Affiliation Departamento de Genética, Universidad de Sevilla, Sevilla, Spain

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• Reinhard Engels,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Jianmin Fu,

  Affiliation Department of Microbiology and Immunology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America

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• Wilhelm Hansberg,

  Affiliation Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico

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• Jung-Mi Kim,

  Affiliation Department of Plant Biology, University of California Davis, Davis, California, United States of America

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• Chinnappa D. Kodira,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Michael J. Koehrsen,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Bo Liu,

  Affiliation Department of Plant Biology, University of California Davis, Davis, California, United States of America

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• Diego Miranda-Saavedra,

  Affiliation Cambridge Institute for Medical Research, Cambridge, United Kingdom

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• Sinead O'Leary,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Lucila Ortiz-Castellanos,

  Affiliation Departamento de Ingeniería Genética, Unidad Irapuato, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City, Mexico

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• Russell Poulter,

  Affiliation Department of Biochemistry, University of Otago, Otago, New Zealand

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• Julio Rodriguez-Romero,

  Affiliation Departamento de Genética, Universidad de Sevilla, Sevilla, Spain

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• José Ruiz-Herrera,

  Affiliation Departamento de Ingeniería Genética, Unidad Irapuato, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City, Mexico

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• Yao-Qing Shen,

  Affiliation Department of Biochemistry, Université de Montréal, Montreal, Canada

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• Qiandong Zeng,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• James Galagan,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Bruce W. Birren,

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Christina A. Cuomo ,

  Contributed equally to this work with: Christina A. Cuomo, Brian L. Wickes

  Affiliation The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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•  [ ... ],
• Brian L. Wickes

  Contributed equally to this work with: Christina A. Cuomo, Brian L. Wickes

  * E-mail: lijun@broad.mit.edu (LJM); wickes@uthscsa.edu (BLW)

  Affiliation Department of Microbiology and Immunology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America

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