Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis

• Manuela Carrasquilla ,

  Contributed equally to this work with: Manuela Carrasquilla, Angela M. Early

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: carrasquilla@mpiib-berlin.mpg.de (MC); early@broadinstitute.org (AME); neafsey@broadinstitute.org (DEN); vcorredore@unal.edu.co (VC)

  Affiliations Department of Immunology and Infectious Diseases, Harvard T.H.Chan School of Public Health, Boston, Massachusetts, United States of America, Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

  https://orcid.org/0000-0002-7953-4376

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• Angela M. Early ,

  Contributed equally to this work with: Manuela Carrasquilla, Angela M. Early

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: carrasquilla@mpiib-berlin.mpg.de (MC); early@broadinstitute.org (AME); neafsey@broadinstitute.org (DEN); vcorredore@unal.edu.co (VC)

  Affiliations Department of Immunology and Infectious Diseases, Harvard T.H.Chan School of Public Health, Boston, Massachusetts, United States of America, Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Aimee R. Taylor,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliations Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America, Center for Communicable Disease Dynamics, Harvard T.H.Chan School of Public Health, Boston, Massachusetts, United States of America

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• Angélica Knudson Ospina,

  Roles Conceptualization, Investigation, Writing – review & editing

  Affiliation Departamento de Microbiología, Facultad de Medicina, Universidad Nacional de Colombia, Bogotá, Colombia

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• Diego F. Echeverry,

  Roles Data curation, Writing – review & editing

  Affiliations Departamento de Microbiología, Facultad de Salud, Universidad del Valle, Cali, Colombia, Centro Internacional de Entrenamiento e Investigaciones Médicas (CIDEIM), Cali, Colombia

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• Timothy J. C. Anderson,

  Roles Funding acquisition, Resources, Supervision, Writing – review & editing

  Affiliation Program in Disease Intervention and Prevention, Texas Biomedical Research Institution, San Antonio, Texas, United States of America

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• Elvira Mancilla,

  Roles Resources, Writing – review & editing

  Affiliation Secretaría Departamental de Salud del Cauca, Popayán, Colombia

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• Samanda Aponte,

  Roles Investigation, Project administration, Resources, Writing – review & editing

  Affiliation Departamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia, Bogotá, Colombia

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• Pablo Cárdenas,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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• Caroline O. Buckee,

  Roles Funding acquisition, Supervision, Writing – review & editing

  Affiliation Center for Communicable Disease Dynamics, Harvard T.H.Chan School of Public Health, Boston, Massachusetts, United States of America

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• Julian C. Rayner,

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliations Wellcome Sanger Institute, Hinxton, Cambridge, United Kingdom, Cambridge Institute for Medical Research, University of Cambridge, Cambridge, United Kingdom

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• Fabián E. Sáenz,

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliation Centro de Investigación para la Salud en América Latina, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador

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• Daniel E. Neafsey ,

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: carrasquilla@mpiib-berlin.mpg.de (MC); early@broadinstitute.org (AME); neafsey@broadinstitute.org (DEN); vcorredore@unal.edu.co (VC)

  Affiliations Department of Immunology and Infectious Diseases, Harvard T.H.Chan School of Public Health, Boston, Massachusetts, United States of America, Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Vladimir Corredor

  Roles Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: carrasquilla@mpiib-berlin.mpg.de (MC); early@broadinstitute.org (AME); neafsey@broadinstitute.org (DEN); vcorredore@unal.edu.co (VC)

  Affiliation Departamento de Salud Pública, Facultad de Medicina, Universidad Nacional de Colombia, Bogotá, Colombia

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