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Transcriptome analysis

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

published 01 Feb 2012

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Myocardial Alternative RNA Splicing and Gene Expression Profiling in Early Stage Hypoplastic Left Heart Syndrome

Marco Ricci, Yanji Xu, Harriet L. Hammond, David A. Willoughby, Lubov Nathanson, Maria M. Rodriguez, Matteo Vatta, Steven E. Lipshultz, Joy Lincoln

published 27 Jan 2012

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A Powerful Method for Transcriptional Profiling of Specific Cell Types in Eukaryotes: Laser-Assisted Microdissection and RNA Sequencing

Marc W. Schmid, Anja Schmidt, Ulrich C. Klostermeier, Matthias Barann, Philip Rosenstiel, Ueli Grossniklaus

published 26 Jan 2012

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Characterization and Comparison of the Leukocyte Transcriptomes of Three Cattle Breeds

Wen Huang, Asif Nadeem, Bao Zhang, Masroor Babar, Morris Soller, Hasan Khatib

published 23 Jan 2012

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Environmental Factors Affecting the Expression of pilAB as Well as the Proteome and Transcriptome of the Grass Endophyte Azoarcus sp. Strain BH72

Lena Hauberg-Lotte, Hannah Klingenberg, Christian Scharf, Melanie Böhm, Jörg Plessl, Frauke Friedrich, Uwe Völker, Anke Becker, Barbara Reinhold-Hurek

published 20 Jan 2012

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RNA-Seq Based Transcriptional Map of Bovine Respiratory Disease Pathogen “Histophilus somni 2336”

Ranjit Kumar, Mark L. Lawrence, James Watt, Amanda M. Cooksey, Shane C. Burgess, Bindu Nanduri

published 20 Jan 2012

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Fast Computation and Applications of Genome Mappability

Thomas Derrien, Jordi Estellé, Santiago Marco Sola, David G. Knowles, Emanuele Raineri, Roderic Guigó, Paolo Ribeca

published 19 Jan 2012

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Broad Phylogenomic Sampling and the Sister Lineage of Land Plants

Ruth E. Timme, Tsvetan R. Bachvaroff, Charles F. Delwiche

published 13 Jan 2012

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A Temporal -omic Study of Propionibacterium freudenreichii CIRM-BIA1^T Adaptation Strategies in Conditions Mimicking Cheese Ripening in the Cold

Marion Dalmasso, Julie Aubert, Valérie Briard-Bion, Victoria Chuat, Stéphanie-Marie Deutsch, Sergine Even, Hélène Falentin, Gwénaël Jan, Julien Jardin, Marie-Bernadette Maillard, Sandrine Parayre, Michel Piot, Jarna Tanskanen, Anne Thierry

published 13 Jan 2012

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Transcriptome-Based Differentiation of Closely-Related Miscanthus Lines

Philippe Chouvarine, Amanda M. Cooksey, Fiona M. McCarthy, David A. Ray, Brian S. Baldwin, Shane C. Burgess, Daniel G. Peterson

published 10 Jan 2012

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Customisation of the Exome Data Analysis Pipeline Using a Combinatorial Approach

Swetansu Pattnaik, Srividya Vaidyanathan, Durgad G. Pooja, Sa Deepak, Binay Panda

published 06 Jan 2012

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IQSeq: Integrated Isoform Quantification Analysis Based on Next-Generation Sequencing

Jiang Du, Jing Leng, Lukas Habegger, Andrea Sboner, Drew McDermott, Mark Gerstein

published 06 Jan 2012

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SNP Discovery and Development of a High-Density Genotyping Array for Sunflower

Eleni Bachlava, Christopher A. Taylor, Shunxue Tang, John E. Bowers, Jennifer R. Mandel, John M. Burke, Steven J. Knapp

published 04 Jan 2012

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