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Transcriptome analysis

Transcriptome Analysis and SNP Development Can Resolve Population Differentiation of Streblospio benedicti, a Developmentally Dimorphic Marine Annelid

Christina Zakas, Nancy Schult, Damhnait McHugh, Kenneth L. Jones, John P. Wares

published 16 Feb 2012

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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample

Chengwei Luo, Despina Tsementzi, Nikos Kyrpides, Timothy Read, Konstantinos T. Konstantinidis

published 10 Feb 2012

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How Plants Sense Wounds: Damaged-Self Recognition Is Based on Plant-Derived Elicitors and Induces Octadecanoid Signaling

Martin Heil, Enrique Ibarra-Laclette, Rosa M. Adame-Álvarez, Octavio Martínez, Enrique Ramirez-Chávez, Jorge Molina-Torres, Luis Herrera-Estrella

published 09 Feb 2012

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Transcriptomic Analysis of Rice (Oryza sativa) Developing Embryos Using the RNA-Seq Technique

Hong Xu, Yi Gao, Jianbo Wang

published 08 Feb 2012

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The Transcriptome of Compatible and Incompatible Interactions of Potato (Solanum tuberosum) with Phytophthora infestans Revealed by DeepSAGE Analysis

Gabor Gyetvai, Mads Sønderkær, Ulrike Göbel, Rico Basekow, Agim Ballvora, Maren Imhoff, Birgit Kersten, Kåre-Lehman Nielsen, Christiane Gebhardt

published 06 Feb 2012

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The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing

Andreas Dötsch, Denitsa Eckweiler, Monika Schniederjans, Ariane Zimmermann, Vanessa Jensen, Maren Scharfe, Robert Geffers, Susanne Häussler

published 03 Feb 2012

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Feature-by-Feature – Evaluating De Novo Sequence Assembly

Francesco Vezzi, Giuseppe Narzisi, Bud Mishra

published 03 Feb 2012

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CAPRG: Sequence Assembling Pipeline for Next Generation Sequencing of Non-Model Organisms

Arun Rawat, Mohamed O. Elasri, Kurt A. Gust, Glover George, Don Pham, Leona D. Scanlan, Chris Vulpe, Edward J. Perkins

published 03 Feb 2012

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Knowledge-Based Reconstruction of mRNA Transcripts with Short Sequencing Reads for Transcriptome Research

Junhee Seok, Weihong Xu, Hui Jiang, Ronald W. Davis, Wenzhong Xiao

published 01 Feb 2012

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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain

published 01 Feb 2012

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Myocardial Alternative RNA Splicing and Gene Expression Profiling in Early Stage Hypoplastic Left Heart Syndrome

Marco Ricci, Yanji Xu, Harriet L. Hammond, David A. Willoughby, Lubov Nathanson, Maria M. Rodriguez, Matteo Vatta, Steven E. Lipshultz, Joy Lincoln

published 27 Jan 2012

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A Powerful Method for Transcriptional Profiling of Specific Cell Types in Eukaryotes: Laser-Assisted Microdissection and RNA Sequencing

Marc W. Schmid, Anja Schmidt, Ulrich C. Klostermeier, Matthias Barann, Philip Rosenstiel, Ueli Grossniklaus

published 26 Jan 2012

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Characterization and Comparison of the Leukocyte Transcriptomes of Three Cattle Breeds

Wen Huang, Asif Nadeem, Bao Zhang, Masroor Babar, Morris Soller, Hasan Khatib

published 23 Jan 2012

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