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Shotgun sequencing

Crewmember microbiome may influence microbial composition of ISS habitable surfaces

Aram Avila-Herrera, James Thissen, [ ... ], Crystal Jaing

Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing

Rendani I. Manenzhe, Felix S. Dube, [ ... ], Clinton Moodley

A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling

Melanie K. Hess, Suzanne J. Rowe, [ ... ], John C. McEwan

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, [ ... ], Menu B. Leddy

Development of a SimpleProbe real-Time PCR Assay for rapid detection and identification of the US novel urethrotropic clade of Neisseria meningitidis ST-11 (US_NmUC)

Evelyn Toh, James A. Williams, [ ... ], David E. Nelson

Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses

Youn Wook Chung, Ho-Jin Gwak, [ ... ], Ji-Hwan Ryu

Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing

Federica Antonelli, Alfonso Esposito, [ ... ], Francesca Guerrieri

California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals

Lindsey Jacobs, Benjamin H. McMahon, [ ... ], Jeanne M. Fair

Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Stephen Woloszynek, Joshua Chang Mell, [ ... ], Gail L. Rosen

Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm

Korin Eckstrom, John W. Barlow

Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems

Schuyler D. Smith, Phillip Colgan, [ ... ], Adina Howe

Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, [ ... ], Dirk Repsilber

Parthenogenesis in a captive Asian water dragon (Physignathus cocincinus) identified with novel microsatellites

Kyle L. Miller, Susette Castañeda Rico, [ ... ], Robert C. Fleischer

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