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Shotgun sequencing

Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean

Chi-Yu Shih, Shiow-Yi Chen, [ ... ], Wen-Shyong Tzou

The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection

Ruijie Xu, Sreekumari Rajeev, Liliana C. M. Salvador

Combining vertebrate mitochondrial 12S rRNA gene sequencing and shotgun metagenomic sequencing to investigate the diet of the leopard cat (Prionailurus bengalensis) in Korea

Cheolwoon Woo, Priyanka Kumari, [ ... ], Naomichi Yamamoto

Drastic reduction of false positive species in samples of insects by intersecting the default output of two popular metagenomic classifiers

Lidia Garrido-Sanz, Miquel Àngel Senar, Josep Piñol

Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia

Prakhar Vijayvargiya, Adeline Feri, [ ... ], Robin Patel

SHIMS 3.0: Highly efficient single-haplotype iterative mapping and sequencing using ultra-long nanopore reads

Daniel W. Bellott, Ting-Jan Cho, [ ... ], David C. Page

ASPICov: An automated pipeline for identification of SARS-Cov2 nucleotidic variants

Valentin Tilloy, Pierre Cuzin, [ ... ], Sophie Alain

BIOME-Preserve: A novel storage and transport medium for preserving anaerobic microbiota samples for culture recovery

Embriette R. Hyde, Hiram Lozano, Steven Cox

A shotgun metagenomic investigation of the microbiota of udder cleft dermatitis in comparison to healthy skin in dairy cows

Lisa Ekman, Elisabeth Bagge, [ ... ], Bo Segerman

Perturbation of the human gastrointestinal tract microbial ecosystem by oral drugs to treat chronic disease results in a spectrum of individual specific patterns of extinction and persistence of dominant microbial strains

Hyunmin Koo, Casey D. Morrow

Shotgun metagenome sequencing identification of a set of genes encoded by Actinomyces associated with medication-related osteonecrosis of the jaw

Hiroko Yahara, Akimitsu Hiraki, [ ... ], Koji Yahara

Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol

Fernanda Sayuri do Nascimento, Milena Oliveira Suzuki, [ ... ], Luiz Augusto Carneiro-D’Albuquerque

Zero-Inflated gaussian mixed models for analyzing longitudinal microbiome data

Xinyan Zhang, Boyi Guo, Nengjun Yi

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