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Shotgun sequencing

Comparison of qPCR and metagenomic sequencing methods for quantifying antibiotic resistance genes in wastewater

Gihan Daw Elbait, Mariane Daou, [ ... ], Ahmed F. Yousef

High-throughput DNA extraction and cost-effective miniaturized metagenome and amplicon library preparation of soil samples for DNA sequencing

Thomas Bygh Nymann Jensen, Sebastian Mølvang Dall, [ ... ], Mads Albertsen

Shotgun metagenomics to investigate unknown viral etiologies of pediatric meningoencephalitis

Andrea Castellot, Juan Camacho, María Dolores Fernández-García, David Tarragó

Are the predicted known bacterial strains in a sample really present? A case study

Minerva Ventolero, Saidi Wang, Haiyan Hu, Xiaoman Li

Tracking gut microbiome and bloodstream infection in critically ill adults

Christopher H. Gu, Layla A. Khatib, [ ... ], Ronald G. Collman

Shotgun metagenomics captures more microbial diversity than targeted 16S rRNA gene sequencing for field specimens and preserved museum specimens

Joseph D. Madison, Brandon C. LaBumbard, Douglas C. Woodhams

Abundance and prevalence of ESBL coding genes in patients undergoing first line eradication therapy for Helicobacter pylori

Dita Gudra, Ivars Silamikelis, [ ... ], Davids Fridmanis

Validation of the shotgun metabarcoding approach for comprehensively identifying herbal products containing plant, fungal, and animal ingredients

Zhaolei Zhang, Weishan Mu, [ ... ], Linchun Shi

AirDNA sampler: An efficient and simple device enabling high-yield, high-quality airborne environment DNA for metagenomic applications

Piyanun Harnpicharnchai, Panyapon Pumkaeo, [ ... ], Supawadee Ingsriswang

Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean

Chi-Yu Shih, Shiow-Yi Chen, [ ... ], Wen-Shyong Tzou

The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection

Ruijie Xu, Sreekumari Rajeev, Liliana C. M. Salvador

Combining vertebrate mitochondrial 12S rRNA gene sequencing and shotgun metagenomic sequencing to investigate the diet of the leopard cat (Prionailurus bengalensis) in Korea

Cheolwoon Woo, Priyanka Kumari, [ ... ], Naomichi Yamamoto

Drastic reduction of false positive species in samples of insects by intersecting the default output of two popular metagenomic classifiers

Lidia Garrido-Sanz, Miquel Àngel Senar, Josep Piñol

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