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Shotgun sequencing

Detection of critical antibiotic resistance genes through routine microbiome surveillance

Zachary M. Burcham, Carl J. Schmidt, [ ... ], Heather R. Jordan

Congruent phylogenetic relationships of Melaphidina aphids (Aphididae: Eriosomatinae: Fordini) according to nuclear and mitochondrial DNA data with taxonomic implications on generic limits

Zhumei Ren, Carol D. von Dohlen, [ ... ], Jun Wen

Shotgun metagenomics of honey DNA: Evaluation of a methodological approach to describe a multi-kingdom honey bee derived environmental DNA signature

Samuele Bovo, Anisa Ribani, [ ... ], Luca Fontanesi

Estimating genetic kin relationships in prehistoric populations

Jose Manuel Monroy Kuhn, Mattias Jakobsson, Torsten Günther

Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection

Chie Owa, Matthew Poulin, Liying Yan, Toshi Shioda

BBMerge – Accurate paired shotgun read merging via overlap

Brian Bushnell, Jonathan Rood, Esther Singer

Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

Eli L. Moss, Shannon B. Falconer, [ ... ], Ami S. Bhatt

A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis

Tomomasa Matsuyama, Motoshige Yasuike, [ ... ], Chihaya Nakayasu

Microbiome overview in swine lungs

Franciele Maboni Siqueira, Esteban Pérez-Wohlfeil, [ ... ], Arnaldo Zaha

Development of microsatellite markers and assembly of the plastid genome in Cistanthe longiscapa (Montiaceae) based on low-coverage whole genome sequencing

Alexandra Stoll, Dörte Harpke, [ ... ], Dietmar Quandt

Filthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City

Julia M. Maritz, Steven A. Sullivan, [ ... ], Jane M. Carlton

The distinct features of microbial ‘dysbiosis’ of Crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred

Umer Zeeshan Ijaz, Christopher Quince, [ ... ], Konstantinos Gerasimidis

Strain-Level Discrimination of Shiga Toxin-Producing Escherichia coli in Spinach Using Metagenomic Sequencing

Susan R. Leonard, Mark K. Mammel, David W. Lacher, Christopher A. Elkins

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