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Sequencing techniques

SPPIPred: Stacking-based ensemble learning model for identification of protein-protein interaction

Md. Ashikur Rahman, Md. Mamun Ali, Md. Shohidullah, Kawsar Ahmed, Francis M. Bui, Li Chen, Mohammad Ali Moni

published 17 Jul 2026

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Design and in silico validation of donor DNA for RNA-guided recombinase-mediated knockout of mstnb gene in Labeo rohita

Lukram Sushil Singh, Porkodi Murugesan, Gowhar Iqbal, Nagavara C. Nidarshan, Harini Gunasekaran, Ad. Viralkumar, Kiran D. Rasal, Manoj P. Brahmane, Sunil K. Nayak, Arvind A. Sonwane, Mukunda Goswami

published 15 Jul 2026

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The effect of different milk pretreatment methods on microbiome community development during Herrgårds cheese production and ripening

Juan Antonio Rodríguez, Luisa Santos-Bay, Apurva Narechania, Christian Carøe, Kimmo Sirén, Sarah S. T. Mak, Ida Broman Nielsen, Max Ramsøe, Thomas S. Pontén, Søren Lillevang, Lene Tranberg Andersen, M. Thomas P. Gilbert

published 14 Jul 2026

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Tool choice matters: Evaluating edgeR vs. DESeq2 for sensitivity, robustness, and cross-study performance

Mostafa Rezapour

published 13 Jul 2026

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Genome misassembly detection using Stash: A data structure based on stochastic tile hashing

Armaghan Sarvar, Lauren Coombe, Inanc Birol

published 13 Jul 2026

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GraphTransDTI: A novel hybrid framework combining graph transformer and CNN-BiLSTM for enhanced Drug-Protein Interaction prediction

Van-Vang Le, Mai Thi Anh Nhu, Pham Truong Viet Thong

published 10 Jul 2026

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Genetic yield of next-generation sequencing for detecting monogenic familial hypercholesterolemia in uzbek patients with coronary artery disease

Rano B. Alieva, Aleksandr B. Shek, Anastasiya V. Bahachova, Khurshid G. Fozilov, Guzal J. Abdullaeva, Alisher A. Abdullaev, Lilya E. Kan, Shavkat U. Khoshimov, Andrey R. Kim, Ulugbek I. Nizamov, Dilnora B. Yusupalieva

published 09 Jul 2026

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Cloacal microbiome variation in wild and captive Eastern Indigo Snakes (Drymarchon couperi) with and without Cryptosporidium serpentis infection

Christopher Roger Brown, Mark Nikolaus Yacoub, James E. Bogan, Matthew D. Buehler, Michelle Lea Hoffman, Janina Alessandra Krumbeck, Zachary J. Loughman

published 09 Jul 2026

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DMS-informed secondary structure modeling of Epstein–Barr Virus LMP-1 pre-mRNA defines novel elements spanning introns

Taylor O. Eich, Evelyn C. Coppenbarger, Abdelraouf O. Dapour, Walter N. Moss

published 02 Jul 2026

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Genetic regulatory axis between AGR2 and ESR1 promotes breast cancer progression

M. Aiman Mohtar, Delphine Fessart, Chia Yuh Cai, Syazalina Zahari, Saiful Effendi Syafruddin, Muhammad-Redha Abdullah-Zawawi, Valerie Le Morvan, Said Taouji, Ted Hupp

published 01 Jul 2026

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Thymidylate synthase inhibitory drugs induce p53-dependent pathways differently

Eszter Holub, Milda Blanka Szajkó, Anna Felföldi, Beáta G. Vértessy, Angéla Békési

published 01 Jul 2026

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Whole-genome sequencing reveals a previously unrecognized measles virus cluster in Burundi

Néhémie Nzoyikorera, David F. Nieuwenhuijse, Leonard Schuele, Cassien Nduwimana, Armstrong Ndihokubwayo, Théogène Ihorimbere, Denis Niyomwungere, Hayley Cassidy, Marjan Boter, Celestin Nibogora, Richard Molenkamp, Alexis Niyomwungere, Dionis Nizigiyimana, Marie Noelle Uwineza, Idrissa Diawara, Saria Otani, Rogier Bodewes, Frank M. Aarestrup, Marion Koopmans, Joseph Nyandwi, Bas B. Oude Munnink

published 30 Jun 2026

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Characterization of Antibiofilm Molecules from Bovine Coagulase-Negative Staphylococci

Coralie Goetz, Ibtissem Doghri, Sneha Das, Audrey Corbeil, Pauline Bouveret, Francis Beaudry, David Lalaouna, Eric Massé, Mario Jacques, François Malouin

published 30 Jun 2026

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